Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27d05
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    27   1.4  
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    26   1.8  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   5.5  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    25   5.5  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    24   7.3  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    24   7.3  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   9.7  

>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +1

Query: 19  RQASFVSFSICTVQSVPSQSLSFFVATNKLPFCDDQEF*FAGQQHIRC--*CYSTRRD 186
           R A ++S S+  ++ +    LS     N  PFC D  +    QQH +C   C  +R+D
Sbjct: 124 RLAVYLSTSLVYIKQL---HLSKPALGNSWPFCLDHSYILEDQQHNKCLVHCNQSRKD 178


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = -3

Query: 246 GGTSLSCHQVKRNVPTATTVIAPSAIALAADVLLPCELEFLVIAKWQFICGNEKRQ 79
           GGT   C Q    +P    V AP  ++      LPC      +  W  + G+++ Q
Sbjct: 111 GGTRDGCFQKYAVLPAHALVHAPKNLSFEEIATLPC----AAVTAWNGLFGSKEHQ 162


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 213 RNVPTATTVIAPSAIALAADVLLPC 139
           R+VP   +++ P+A++    +L PC
Sbjct: 176 RSVPCDNSILGPAALSREPTILQPC 200


>SPCC126.07c |||human CTD-binding SR-like protein rA9
          homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 38 RFQSVPCKVFHHNHC 82
          R   +PC  + HNHC
Sbjct: 50 RIAKIPCGHYFHNHC 64


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 83  RFSLPQINCHFAMTKNSNSQGSNTSAANAIALGAMT 190
           + +LP       +  N NS  ++   A AIALG++T
Sbjct: 847 KLTLPANEYFDTIASNLNSPNADVMKAAAIALGSLT 882


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 50  VPCKVFHHNHCRFSLPQINCHFAMTKNSNSQGS 148
           V CK F  N CR+     NC    T  SN Q +
Sbjct: 2   VVCKYFLQNRCRYG---TNCKNQHTVPSNGQNA 31


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 348 KRVHVSIILRTKLF--FRCTMFCYYLRRF 268
           K   V++IL +++F    CTMF Y+ R F
Sbjct: 142 KAKSVALILVSRIFTGVACTMFLYHKRYF 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,597,483
Number of Sequences: 5004
Number of extensions: 30040
Number of successful extensions: 62
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)