Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27d02
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0049 - 20277234-20277251,20277670-20277795,20278085-202781...    32   0.35 
04_02_0011 - 8513471-8513673,8513815-8513869                           29   3.3  
09_04_0350 + 16899076-16900164                                         28   4.3  
11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,259...    27   7.5  
05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802     27   7.5  
05_01_0243 - 1806770-1806832,1806942-1807061,1807275-1807457,180...    27   7.5  
11_03_0107 + 10084234-10084348,10084830-10084834,10085351-100858...    27   10.0 
01_06_1227 + 35531840-35532516,35532665-35532836,35533158-355333...    27   10.0 

>03_05_0049 -
           20277234-20277251,20277670-20277795,20278085-20278153,
           20278233-20278280,20278413-20278494,20278583-20278662,
           20278764-20278835,20278912-20279006,20280396-20280477,
           20280604-20280963
          Length = 343

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +3

Query: 75  CITQ*LRLSLNLPPVVPAVGEAGTMAQSTLGYLHGSHPLPGTRSGLLAPPSV 230
           C T   RL+++ P  VP    A  MA +  GY      LPG+  GL A  S+
Sbjct: 29  CSTPPFRLNVHAPEFVPRSPAASPMAAAAAGYYSPFLQLPGSSIGLGADWSI 80


>04_02_0011 - 8513471-8513673,8513815-8513869
          Length = 85

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 209 APCTTIGSTCLDCTTKQVCTKVGGIQRACLDPT-LPYCNLGECSATP 346
           AP T +   C+D T K +C+     +  C     L YCN   C+ +P
Sbjct: 33  APITEVPKPCVDATCKAICSDKYQSKGECFSTDGLYYCNF--CANSP 77


>09_04_0350 + 16899076-16900164
          Length = 362

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 22/46 (47%), Positives = 24/46 (52%)
 Frame = -1

Query: 217 ARSPLRVPGSGCDPWRYPRVDCAIVPASPTAGTTGGRLRDSRSYCV 80
           AR P  V  SG + WR  R D A   AS TAG  GGR R S +  V
Sbjct: 71  ARRPWLV-SSGAEAWRR-RGDAASA-ASATAGGAGGRSRRSGATAV 113


>11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,
            2590301-2590606,2590698-2590912,2591461-2591755,
            2591901-2592065,2592142-2592738,2593029-2593115,
            2593203-2593523,2594047-2596071
          Length = 1477

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 255  LVVQSRQVLPMVVQGAHCGYQGADAIHGGIQGLT 154
            L ++ RQ  P+V+ G  C ++G D I  GI G T
Sbjct: 1234 LKIKYRQDAPLVLHGITCTFEGGDKI--GIVGRT 1265


>05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802
          Length = 320

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 214 RSPLRVPGSGCDPWRYPRVDCAIVPASPTAG 122
           R P ++P     P+ +PR D A+ P+SP  G
Sbjct: 40  RQPAKIPA----PFVWPRADVALPPSSPPTG 66


>05_01_0243 -
           1806770-1806832,1806942-1807061,1807275-1807457,
           1807554-1807693,1807768-1808010,1808664-1808781,
           1808902-1808977,1809054-1809120,1809201-1809288,
           1809381-1809491,1809632-1809799,1809946-1810040,
           1810123-1810162,1810242-1810318,1810607-1810655,
           1810756-1810812,1810959-1811048,1811160-1811223,
           1812085-1812245
          Length = 669

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -1

Query: 196 PGSGCDPWRYPRVDCAIVPASPTAGTTGGRLRDSRSYCVMHKAIITFETIFIDKM 32
           P   C P   P   C I+  S T+G   G +    S+ +  K +  F   F DKM
Sbjct: 216 PAQPCAP--KPNDTCTIMYTSGTSGEPKGVMLSHESHAIYVKGVDLFMEQFDDKM 268


>11_03_0107 +
           10084234-10084348,10084830-10084834,10085351-10085803,
           10086143-10086267,10087282-10087345,10087452-10087508,
           10088475-10088485,10089923-10090802
          Length = 569

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +2

Query: 245 CTTKQVCTKVGGIQRA--CLDPTL--PYCNLGECSATPAEGCEPASGASVA 385
           C+T +  T +G I  A     P+L  P CN    +A  +  CEP  GA+++
Sbjct: 31  CSTVEQATGLGYIVLALQAYTPSLHPPPCNPAATTAAASTTCEPVRGANLS 81


>01_06_1227 +
           35531840-35532516,35532665-35532836,35533158-35533357,
           35533467-35533622,35536878-35537235,35537407-35537418
          Length = 524

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 106 TCHRWCRRLGRLEQWRSQPLDTSMDR 183
           TC R  RR    ++WR QP D SM R
Sbjct: 201 TCMRNGRRDDTYQKWRWQPKDCSMPR 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,956,458
Number of Sequences: 37544
Number of extensions: 300562
Number of successful extensions: 1002
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)