Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27c20
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    64   2e-11
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p...    27   3.4  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    25   7.8  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    25   7.8  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    25   7.8  

>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 40/93 (43%), Positives = 53/93 (56%), Gaps = 10/93 (10%)
 Frame = +2

Query: 116 AVTFNLVHRSQRDPLAADETAPQRVLVPVNTIIPPTK-----DKDTEY--TPEQRKEEQR 274
           A TF+LVHRSQRDP   DE A +RVLV   T+    +       D EY  T    + E  
Sbjct: 12  AQTFHLVHRSQRDPQYHDENATERVLVSAETLNKTARRLNRQTLDEEYGSTIRPNEGEAA 71

Query: 275 KYGIYYDD-DYNYLQHLKD--TKEVTLVLQPKT 364
            YGIY+DD +Y+Y+QHL++   ++ T V  P T
Sbjct: 72  NYGIYFDDTEYDYMQHLRNIGNEDATWVEAPAT 104


>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 232

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 266 EQRKYGIYYDDDYNYLQHLKDTKEVTLVLQPKTPH 370
           E  K  IYYDDD   ++ +    ++ L+L  + PH
Sbjct: 46  ESYKNVIYYDDDVVLVRDMFPKSKMHLLLMTRDPH 80


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 224 KDKDTEYTPEQRKEEQRKYGIYYDDDYNYLQHLKDTKEVTL-VLQPKTPHKKK 379
           +DK  E   +     Q +   Y+DDD NY+    +  +V +  L P+  HK K
Sbjct: 478 RDKSLELKFKGHANAQSQNRAYFDDDGNYVICGSEDHQVFIWDLPPQHMHKTK 530


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/50 (22%), Positives = 26/50 (52%)
 Frame = +2

Query: 206 TIIPPTKDKDTEYTPEQRKEEQRKYGIYYDDDYNYLQHLKDTKEVTLVLQ 355
           T +    D + +Y P++ K+ ++   +  DD+   ++  +  KE+T V +
Sbjct: 90  TAVTELDDDEFDYKPKKGKKGKKSKKVEEDDEPQEIESPQGPKELTAVTE 139


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -2

Query: 614 CLPV-HFQDHQNQNLHPKRPLLPDPDRGVNPVEQLY*VNQHPL 489
           CLP    QD+ N +LH  R + P P   ++    L      PL
Sbjct: 103 CLPSDRQQDYINPSLHLNRTVFPTPQHSISDANFLANTVDQPL 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,113
Number of Sequences: 5004
Number of extensions: 42819
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)