Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27c19
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976... 105 4e-23
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 32 0.37
10_08_0819 - 20803992-20804493,20804578-20804759,20804849-208049... 28 6.0
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 28 8.0
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 28 8.0
05_07_0074 - 27509124-27509199,27509613-27512143 28 8.0
>05_03_0387 +
13396158-13396271,13396390-13396434,13397004-13397632,
13397727-13397874,13397971-13398147,13398527-13398595,
13398699-13398788,13399000-13399158,13399663-13399753,
13399917-13400008,13400009-13400233,13400394-13400585
Length = 676
Score = 105 bits (251), Expect = 4e-23
Identities = 64/190 (33%), Positives = 96/190 (50%), Gaps = 7/190 (3%)
Frame = +1
Query: 139 SASVDTISSDIKLKNVDRTVDISTQLVKVVSKIVLENSGKSSVKHFLFAVEEAAKNNLAF 318
+AS T +D+ + DR VD+++ +V+V++ + +ENSG +V FL A NLA
Sbjct: 20 AASTPTARADLVVTRADRKVDLTSHIVRVLTSLKVENSGPEAVSQFLLAFPNVQAKNLAA 79
Query: 319 IGAKDSNSKD------LRLAETTVKGYD-YVKFWRVELKEPLNAGATVNVVVETVFTKAL 477
I A + K L + G + F+ L +PL G T+++ V TVFT ++
Sbjct: 80 IRAFGTEEKVKGPSMVLPIEVVQPSGVPPELTFFSASLSKPLEKGKTLHLDVLTVFTHSV 139
Query: 478 QPYPTAITQQEDQFVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTKVKPFSQVDGTII 657
QP+P ITQ E Q V Y + SPY Q S+ L VES+TK + +
Sbjct: 140 QPFPEEITQAESQLVVYQDSAQYLSPYPVKVQTLSIRLPGGRVESYTKYPNTKLAESELK 199
Query: 658 YGPYANVGPF 687
YGPY ++ PF
Sbjct: 200 YGPYEDLPPF 209
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/62 (24%), Positives = 34/62 (54%)
Frame = +1
Query: 199 DISTQLVKVVSKIVLENSGKSSVKHFLFAVEEAAKNNLAFIGAKDSNSKDLRLAETTVKG 378
++S + ++ I E+ + H E+++N++ F +D+N DL +A++ ++G
Sbjct: 1021 NVSLESLETTENITSEDENEIKAGHLC----ESSENDIRFPEKEDTNKIDLEVADSVMEG 1076
Query: 379 YD 384
YD
Sbjct: 1077 YD 1078
>10_08_0819 -
20803992-20804493,20804578-20804759,20804849-20804911,
20805736-20805846,20806668-20806721,20807040-20807075,
20807356-20807400,20807473-20807562,20807863-20808195
Length = 471
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 482 GCKALVNTVSTTTFTVAPAFRGSLSSTRQNLT*S*PFT 369
GC AL+ S T+F RG++S R + + PFT
Sbjct: 364 GCHALIRRTSNTSFARDQICRGNVSGLRMSKSAIIPFT 401
>12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 27.9 bits (59), Expect = 8.0
Identities = 27/113 (23%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Frame = +1
Query: 139 SASVDTISSDIKLKNVDRTVDISTQLVKVVSKIVLEN---SGKSSVKHFLF--AVEEAAK 303
S S + +S+ +K T D+ +L++++ KIVL+N SG ++++ L A++
Sbjct: 996 SKSPEQVSAAVK---AFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPS 1052
Query: 304 NNLAFIGAKDSNSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETV 462
+ ++ D N + E V+ + + + + K LN A VNV+++ +
Sbjct: 1053 RVMDYVNRLD-NFDGPAVGEVAVEAQLFEEAFAIFKKFNLNVQA-VNVLLDNI 1103
>11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 27.9 bits (59), Expect = 8.0
Identities = 27/113 (23%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Frame = +1
Query: 139 SASVDTISSDIKLKNVDRTVDISTQLVKVVSKIVLEN---SGKSSVKHFLF--AVEEAAK 303
S S + +S+ +K T D+ +L++++ KIVL+N SG ++++ L A++
Sbjct: 996 SKSPEQVSAAVK---AFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPS 1052
Query: 304 NNLAFIGAKDSNSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETV 462
+ ++ D N + E V+ + + + + K LN A VNV+++ +
Sbjct: 1053 RVMDYVNRLD-NFDGPAVGEVAVEAQLFEEAFAIFKKFNLNVQA-VNVLLDNI 1103
>05_07_0074 - 27509124-27509199,27509613-27512143
Length = 868
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 458 VSTTTFTVAPAFRGSLSSTRQNLT 387
++ ++ T+AP FRGSLS + N T
Sbjct: 405 IAASSNTIAPYFRGSLSGLKYNYT 428
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,321,934
Number of Sequences: 37544
Number of extensions: 348829
Number of successful extensions: 767
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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