Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27c19
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54864| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   7e-17
SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)            31   0.87 
SB_7746| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_11498| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_52486| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_38467| Best HMM Match : RVT_1 (HMM E-Value=4.2e-05)                 28   8.1  
SB_19819| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0)                     28   8.1  

>SB_54864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 36/88 (40%), Positives = 58/88 (65%)
 Frame = +1

Query: 424 NAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGNLYTYSPYYTSTQKTSVILNTKT 603
           ++G +V+V VE VF  A++P+P  + Q +   V + GN YT++ Y +  Q T++ L++  
Sbjct: 83  SSGGSVDVSVEEVFAHAMKPFPAKVAQSDKHQVLFTGNHYTFAVYKSKQQSTTITLSSSN 142

Query: 604 VESFTKVKPFSQVDGTIIYGPYANVGPF 687
           +ES+TK+KP SQ D TI  GPY++V  F
Sbjct: 143 IESYTKLKPSSQSDNTITLGPYSDVDAF 170



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 27/69 (39%), Positives = 40/69 (57%)
 Frame = +1

Query: 157 ISSDIKLKNVDRTVDISTQLVKVVSKIVLENSGKSSVKHFLFAVEEAAKNNLAFIGAKDS 336
           I+ D+ L    R +D+S+QLVKV + I L+N G   V  F FAV+ +  +NLA + A   
Sbjct: 26  INHDLVLSKASRKIDLSSQLVKVSTSITLDNGGNQPVDSFHFAVDPSVADNLALLSASSG 85

Query: 337 NSKDLRLAE 363
            S D+ + E
Sbjct: 86  GSVDVSVEE 94


>SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)
          Length = 581

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +1

Query: 505 QEDQFVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTKVKPFSQVDGT 651
           + +Q    +GNL +  P+ T + K+++ +++K  +SF    PFS+ + T
Sbjct: 91  ETNQIPSELGNLKSQDPWNTGSLKSAIGVDSKPSQSFNPETPFSKNEMT 139


>SB_7746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +1

Query: 508 EDQFVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTKVKPFSQVDGTIIYG 663
           E++F K    +Y+Y+P Y+S    +++     V +  + K    +  TI+ G
Sbjct: 34  ENKFFKVFRGMYSYTPRYSSPHDRNLLWYHSAVTNIVEYKSMGNLFTTILRG 85


>SB_11498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = +1

Query: 241 LENSGKSSVKHFLFAVEEAAKNNLAFIGAKDSNSKDLRLAETTVKGY---DYVKFWRVEL 411
           LEN G   VKH        AK  L    AKD N K L    + ++G    + ++ +R EL
Sbjct: 8   LENLGAKPVKHVTSQKHLRAKAILEKDKAKDQNIKTLLSKHSNIQGSTLPEEMRLYRYEL 67

Query: 412 KE-PLNAG 432
            E  L AG
Sbjct: 68  VEIMLKAG 75


>SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = +3

Query: 366 HCERL*LC*ILACGAQGTPKRRCHSKCCCRN---CVHQ--SFTTI-SDSYNSARRPVCEI 527
           HC     C   +C   G   + C +KC C+N   CV++   FT I S  +N     +CE 
Sbjct: 104 HCVDAYKCFRCSCDGTGYYGQTCQNKCPCKNGGHCVNKVDGFTCICSPGFNG---KLCEN 160

Query: 528 CW 533
            W
Sbjct: 161 IW 162


>SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = +3

Query: 366 HCERL*LC*ILACGAQGTPKRRCHSKCCCRN---CVHQ--SFTTI-SDSYNSARRPVCEI 527
           HC     C   +C   G   + C +KC C+N   CV++   FT I S  +N     +CE 
Sbjct: 104 HCVDAYKCFRCSCDGTGYYGQTCQNKCPCKNGGHCVNKVDGFTCICSPGFNG---KLCEN 160

Query: 528 CW 533
            W
Sbjct: 161 IW 162


>SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/73 (30%), Positives = 30/73 (41%)
 Frame = +1

Query: 466 TKALQPYPTAITQQEDQFVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTKVKPFSQVD 645
           T  ++P  TA      +    V    T  P  T  + TS +  T TVE    V+P S V+
Sbjct: 86  TNTVEPTSTAEPTNTVEPTNTVEPTSTVEPTNT-VEPTSTVEPTSTVEPTNTVEPTSTVE 144

Query: 646 GTIIYGPYANVGP 684
            T    P + V P
Sbjct: 145 PTSTVEPTSTVVP 157


>SB_52486| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 224 TFTSWVDISTVRSTFFNFISLDIVSTLALRVCIVRNNTKKSV 99
           T T W+DISTV +    +I L   +T      +V  NT+K V
Sbjct: 28  TRTHWMDISTVVTKQPVYIPLPAKATTKYEYSLVNFNTRKHV 69


>SB_38467| Best HMM Match : RVT_1 (HMM E-Value=4.2e-05)
          Length = 400

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 489 DSYNSARRPVCEICWQFVYILPVLYLHTKNQRNSKYKDC 605
           DS  +AR P C+I  Q+VY + V  LH  +  N   K+C
Sbjct: 318 DSNLNARLPACDITSQYVYRMAV-SLHVTSSHN-MCKEC 354


>SB_19819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 557 YGEYVYKLPTYFTNWSSC 504
           YGE++  LPTY+T  S+C
Sbjct: 225 YGEHMQPLPTYYTMESTC 242


>SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0)
          Length = 875

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 1/130 (0%)
 Frame = +1

Query: 187 DRTVDISTQLVKVVSKIVLENSGKSSVKHFLFAVEEAAKNNLAFIGAKDSNSKDLRLAET 366
           +R   + T L  +VS+   +   K   K  + A+E   KN+  F       S  LR  E 
Sbjct: 356 ERLYMVRTMLESIVSEKGAKKMRKDLDKEHIDAIETFLKNSFFF-------SDLLRFGEV 408

Query: 367 TVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQE-DQFVKYVGNLY 543
             +  D  + W  E    L  GA +   +E      L  +     +    ++V Y  +LY
Sbjct: 409 LRECCDLSQLWFREFYLELTMGARIQFPIEMSLPWILTNHILESKEPSMMEYVLYPLDLY 468

Query: 544 TYSPYYTSTQ 573
             S +Y  T+
Sbjct: 469 NDSAHYALTE 478


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,933,530
Number of Sequences: 59808
Number of extensions: 447134
Number of successful extensions: 1198
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)