Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27c19
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical ...    94   7e-20
U41532-8|AAK68318.1|  331|Caenorhabditis elegans Hypothetical pr...    31   0.77 
U41532-7|ABD63237.1|  769|Caenorhabditis elegans Hypothetical pr...    31   0.77 
U41532-6|AAF99908.2|  812|Caenorhabditis elegans Hypothetical pr...    31   0.77 
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U53148-3|AAB37077.1|  282|Caenorhabditis elegans Ground-like (gr...    28   7.2  
AF047652-5|AAC04391.2|  449|Caenorhabditis elegans Hypothetical ...    28   7.2  
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    27   9.5  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    27   9.5  
AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel...    27   9.5  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    27   9.5  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    27   9.5  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    27   9.5  
AF025452-1|AAB70944.1|  411|Caenorhabditis elegans C-type lectin...    27   9.5  

>AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical
           protein T22D1.4 protein.
          Length = 586

 Score = 94.3 bits (224), Expect = 7e-20
 Identities = 59/174 (33%), Positives = 88/174 (50%), Gaps = 2/174 (1%)
 Frame = +1

Query: 172 KLKNVDRTVDISTQLVKVVSKIVLENSGKSSVKHFLFAVEEAAKNNLAFIGAKDSNSKD- 348
           K  NVDRT+D ++Q+VKV +    EN G       L A+ +     L+FI A    SK  
Sbjct: 20  KAANVDRTIDATSQIVKVSTLYSFENVGNGPQSKVLIALSKEESATLSFISAGIDGSKGK 79

Query: 349 LRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKY 528
           L+++E   +    +  + V+L+ P+  GA V + +    T+ L+P P+ I Q + QFV  
Sbjct: 80  LKISEKPAE--KDLAVYEVDLRTPVAKGAKVTIRINLRITQVLEPLPSKIQQSDSQFVVL 137

Query: 529 VGNLYTYSPYYTSTQKTSV-ILNTKTVESFTKVKPFSQVDGTIIYGPYANVGPF 687
             + Y  S Y T TQKT++       + S T V P  Q    +IYGPY N+  F
Sbjct: 138 HTSAYVPSLYETVTQKTTIRTTQGGKLLSATTVSPSKQETERVIYGPYVNIPAF 191


>U41532-8|AAK68318.1|  331|Caenorhabditis elegans Hypothetical
           protein F11D5.1b protein.
          Length = 331

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 544 TYSPYYTSTQKTSVILNTKTVESFTK 621
           TYSP YTST   SV L++K VE  +K
Sbjct: 53  TYSPSYTSTSLNSVSLSSKYVEEKSK 78


>U41532-7|ABD63237.1|  769|Caenorhabditis elegans Hypothetical
           protein F11D5.1c protein.
          Length = 769

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 544 TYSPYYTSTQKTSVILNTKTVESFTK 621
           TYSP YTST   SV L++K VE  +K
Sbjct: 491 TYSPSYTSTSLNSVSLSSKYVEEKSK 516


>U41532-6|AAF99908.2|  812|Caenorhabditis elegans Hypothetical
           protein F11D5.1a protein.
          Length = 812

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 544 TYSPYYTSTQKTSVILNTKTVESFTK 621
           TYSP YTST   SV L++K VE  +K
Sbjct: 534 TYSPSYTSTSLNSVSLSSKYVEEKSK 559


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 429 RCHSKCCCRNCVHQSFTTISDSYNSARRPVC 521
           RC SK C  NC +  F  + D+  S  R +C
Sbjct: 109 RCSSKDCNHNCTNTEFDPVCDTNGSVYRNLC 139


>U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical
           protein T25B6.2 protein.
          Length = 798

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 196 VDISTQLVKVVSKIVLENSGKSSVKHFLFAVEEAAKNNLA 315
           VD+ +++V  +SKI + ++  S  +    A  E  KNNLA
Sbjct: 119 VDVYSEIVAALSKIDVTSTTTSKTERITKAAFETCKNNLA 158


>U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical
           protein C08A9.3 protein.
          Length = 739

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = -3

Query: 263 DDLPLFSKTIFDTTFTSWVDISTVR-STFFNFISLDIVSTLALRVCIVRNNTKKSVNCNF 87
           D + LF K     +   +  +  V+ S +FNF+   I  ++   +  + +  K S N NF
Sbjct: 325 DKIWLFDKPSMIVSHKEYQKLKLVKDSKYFNFLFFQIFGSILPSLTTLFDKQKTSNNLNF 384

Query: 86  AIAGNLISLYF 54
                L SL F
Sbjct: 385 CYLNFLCSLEF 395


>Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical
           protein C14B1.5 protein.
          Length = 396

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -3

Query: 263 DDLPLF-SKTIFDTTFTSWVDISTVRSTFFNFISLDIVSTLALRVCIVRNNTKKSVNCNF 87
           +DL +  S   F+   T W     +RST   +++L     L +  C++ +  +K   C+ 
Sbjct: 23  EDLKILPSNYTFEVPKTIW----KIRSTESKYVALQFPEGLIMYACVIADILEKYTGCDT 78

Query: 86  AIAGNL 69
            I G++
Sbjct: 79  VIMGDV 84


>U53148-3|AAB37077.1|  282|Caenorhabditis elegans Ground-like (grd
           related) protein10 protein.
          Length = 282

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 139 SASVDTISSDIKLKNVDRTVDISTQLVKVVSKIVLENSGKSS 264
           S    TISS+I     D T+D +     V+ K+++EN   SS
Sbjct: 181 SVETTTISSEISGMETDETLDKNKCSSSVLRKLMIENISDSS 222


>AF047652-5|AAC04391.2|  449|Caenorhabditis elegans Hypothetical
           protein C34H4.2 protein.
          Length = 449

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
 Frame = +1

Query: 325 AKDSNSKDLRLAETTVKG--YDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPY--PT 492
           A D +  +LRL +    G  Y          K  ++ G T+        T AL  Y   T
Sbjct: 49  ASDDDPSNLRLIQIITGGNTYSLADLVSTPQKITISGGLTITSTNPDAVTYALTGYIYVT 108

Query: 493 AITQQEDQFVKYVGNLYTYSPYYTSTQKTSVILNTK 600
              Q +D   K +     ++      Q T+VILNT+
Sbjct: 109 TAQQAQDPLFKVLVVTGAHTLNANGVQATTVILNTE 144


>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 524 NMLAICIHTPRTI 562
           +M+ +CIHTPRTI
Sbjct: 61  SMITVCIHTPRTI 73


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 524 NMLAICIHTPRTI 562
           +M+ +CIHTPRTI
Sbjct: 61  SMITVCIHTPRTI 73


>AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           b protein.
          Length = 978

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 524 NMLAICIHTPRTI 562
           +M+ +CIHTPRTI
Sbjct: 119 SMITVCIHTPRTI 131


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           a protein.
          Length = 1562

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 524 NMLAICIHTPRTI 562
           +M+ +CIHTPRTI
Sbjct: 119 SMITVCIHTPRTI 131


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           c protein.
          Length = 1913

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 524 NMLAICIHTPRTI 562
           +M+ +CIHTPRTI
Sbjct: 119 SMITVCIHTPRTI 131


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           d protein.
          Length = 1861

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 524 NMLAICIHTPRTI 562
           +M+ +CIHTPRTI
Sbjct: 91  SMITVCIHTPRTI 103


>AF025452-1|AAB70944.1|  411|Caenorhabditis elegans C-type lectin
           protein 2 protein.
          Length = 411

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 650 VPSTCEKGFTLVNDSTVFVFR 588
           +PS C  GFTLVN   + +F+
Sbjct: 17  LPSVCTDGFTLVNGKCLMMFK 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,790,559
Number of Sequences: 27780
Number of extensions: 345395
Number of successful extensions: 979
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)