Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27c19
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   0.68 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.68 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   0.89 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.3  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 489 DSYNSARRPVCEICWQFVYILPVLYLH 569
           D Y+    PVC +C+  +Y   ++YLH
Sbjct: 405 DKYSRIVFPVCFVCFNLMYW--IIYLH 429


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 489 DSYNSARRPVCEICWQFVYILPVLYLH 569
           D Y+    PVC +C+  +Y   ++YLH
Sbjct: 405 DKYSRIVFPVCFVCFNLMYW--IIYLH 429


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +1

Query: 508 EDQFVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTKVKPFSQVDGTIIYGPYANVG 681
           +D F +   N + Y P YT   K +V   + TV++       S V   + Y P  + G
Sbjct: 223 DDSFHRLTSNTFDYDPRYT---KLTVAGESFTVKNGIYGIALSPVTNNLYYSPLLSHG 277


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 168 YKVKKCRSHSRYIDPTRKSSIKNSL 242
           YK  +CR+  R    TR S+ K  L
Sbjct: 176 YKTYQCRTKHRLTGETRLSATKGRL 200


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 489 DSYNSARRPVCEICWQFVY 545
           D Y+    PVC +C+  +Y
Sbjct: 343 DKYSRIVFPVCFVCFNLMY 361


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 586 LRWFFVWRYS 557
           LRWF +WR S
Sbjct: 29  LRWFEIWRDS 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,306
Number of Sequences: 438
Number of extensions: 4383
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)