Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27c11
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...   137   2e-33
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...   137   2e-33
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...    28   1.4  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    27   3.3  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    27   3.3  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   4.3  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   5.7  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    26   5.7  
SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase |Schizosacchar...    25   7.5  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    25   7.5  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    25   7.5  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    25   9.9  
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb...    25   9.9  

>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score =  137 bits (331), Expect = 2e-33
 Identities = 75/172 (43%), Positives = 109/172 (63%), Gaps = 2/172 (1%)
 Frame = +3

Query: 156 KMEVDYSATCDEKLPLWKSWAAQGKIQ--EAIDQLLALEKQTRTGADMVSTSRILVTVVQ 329
           K EVDYS    E   L KS      I     +++LL  EKQ R  +D  + +++L+ +  
Sbjct: 4   KPEVDYSEKFAE---LQKSLNNLNTIDIDANLEKLLIFEKQVRQASDTSTNTKVLIYIAD 60

Query: 330 IYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIETLRTIT 509
           + F A ++  LN+ +V L K+  QLKQ++  +VQ   TY+    D +TKI LIETLRTIT
Sbjct: 61  LLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTIT 120

Query: 510 EGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYGSMDRGKKLS 665
           +GKIYVEVERARLT +L++I+EE+G++  A +I+    VETYGS D  +K++
Sbjct: 121 DGKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEPVETYGSFDLKEKVA 172


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score =  137 bits (331), Expect = 2e-33
 Identities = 75/172 (43%), Positives = 109/172 (63%), Gaps = 2/172 (1%)
 Frame = +3

Query: 156 KMEVDYSATCDEKLPLWKSWAAQGKIQ--EAIDQLLALEKQTRTGADMVSTSRILVTVVQ 329
           K EVDYS    E   L KS      I     +++LL  EKQ R  +D  + +++L+ +  
Sbjct: 4   KPEVDYSEKFAE---LQKSLNNLNTIDIDANLEKLLIFEKQVRQASDTSTNTKVLIYIAD 60

Query: 330 IYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIETLRTIT 509
           + F A ++  LN+ +V L K+  QLKQ++  +VQ   TY+    D +TKI LIETLRTIT
Sbjct: 61  LLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTIT 120

Query: 510 EGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYGSMDRGKKLS 665
           +GKIYVEVERARLT +L++I+EE+G++  A +I+    VETYGS D  +K++
Sbjct: 121 DGKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEPVETYGSFDLKEKVA 172


>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
 Frame = +3

Query: 153 IKMEVDYSATCDEKLPLWK----SWAAQGKIQEAIDQLLALEKQTRTGADMV-STSRILV 317
           + M +  +    +KLPLWK    ++  +G     +     L   +  G D+      IL 
Sbjct: 114 VSMAICRAGAAQKKLPLWKYIAENFGTKGPYVLPVPSFNVLNGGSHAGGDLAFQEFMILP 173

Query: 318 TVVQIYFEAKNWSALNDH-IVVLSKRR 395
           T    + EA  W A   H +  ++K+R
Sbjct: 174 TGAPSFSEAMRWGAETYHTLKSIAKKR 200


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 132 LDASGKIIKMEVDYSATCDEKLPLWKSWAAQGKI-QEAIDQL 254
           LDA  K I  E  +S    E+L  ++ W +QG I ++  DQL
Sbjct: 450 LDAESKGIAYEYKHSTFFSEQLTAFEVWLSQGLISRKPPDQL 491


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = -3

Query: 209 FPQGQFLITCCTIVHFHFYYFSTSIETADISVCSHFEKLKQNNLLNSVNVTIHKII 42
           FP    +I CC IVH  F       +  DIS  S+     QN  +  +N  +   I
Sbjct: 160 FPFVLAVIKCCDIVHREF-LMGNLYDEEDISSFSYHMSFLQNYPIEKLNYLLQSSI 214


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
 Frame = +3

Query: 390 RRSQLKQAVVKMVQECYTYVDKTPDKETKI-----KLIETLRTITEGK-IYVEVE--RAR 545
           +RS  K+     V+ C++ +D  P K  ++      L +T + ++E K I+ E+E    R
Sbjct: 678 QRSLDKEEEKLFVEHCHSMIDVIPSKSAEVYSHLETLTKTFKNLSEAKPIFDEIELLDKR 737

Query: 546 LTHILAKIREEEGNV 590
           L+    ++ + +G++
Sbjct: 738 LSETKTELSDLQGDL 752


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +3

Query: 99   FKMTTNGDIGGLDASGKIIKMEVDYSATCDEKLPLWKSWAAQGKIQEAIDQLL 257
            +KM  +  +  + AS  +   E  + A C  KL  WK        QE++  +L
Sbjct: 1581 YKMGDSSKLVDILASSSVSSEERSFLARCFHKLGKWKKSLQDSVNQESVRDIL 1633


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +3

Query: 441 TYVDKTPDKETKIKLIETLRTITEGKIYVEVERARLTHILAKIREEEGNVAEAAK 605
           T+  K  ++ TK++    +R I +       + A+    L K REEE   AEAAK
Sbjct: 29  TFGLKNKNRSTKVQA--KIRQIEQNAAASGSKDAKRQEALRKRREEEKRAAEAAK 81


>SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +3

Query: 147 KIIKMEVDYSATCDEKLPLWKSWAAQG 227
           +IIK++++ +  CD++L   + W A+G
Sbjct: 159 RIIKIKLESARICDQRLNNVQKWNARG 185


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/56 (21%), Positives = 29/56 (51%)
 Frame = +3

Query: 453 KTPDKETKIKLIETLRTITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQEL 620
           +TPD  +++K  E  + + + + Y++ ++A  + +      + G+ A A K   E+
Sbjct: 370 RTPDILSRLKDAEKSKELQDREAYIDPDKAEESRVKGNELFKSGDFANAIKEYTEM 425


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +3

Query: 18  ISRIYNAGNYFVYCYVY*VQKIVLFQFFKMTTNG-----DIGGLDASGKIIKMEVDYSAT 182
           +SR+Y+         ++ +Q+  LF  +K+  NG     DI G+      I + V  +A+
Sbjct: 163 LSRVYDVTRLTNINDIFTMQETGLF--WKLVPNGTPEVEDIKGITRFKARITLTVCCNAS 220

Query: 183 CDEKLPLW 206
             E+LPLW
Sbjct: 221 GTERLPLW 228


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 396 SQLKQAVVKMVQE---CYTYVDKTPDKETKIKLIETLR 500
           S  K+ + + +QE   C TY+++TPD     K+ E  R
Sbjct: 94  SGTKKLIDEFIQEVLMCLTYLEETPDLSLDEKITEFSR 131


>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 353

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 521 DLSFCYGSQCFN*FYLCFFIGCFVYISVA 435
           DLS  + +  +  FY+CF  G F Y+ +A
Sbjct: 23  DLSRSHLTTQYKSFYMCFDDGSFGYLQIA 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,201
Number of Sequences: 5004
Number of extensions: 52049
Number of successful extensions: 153
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)