Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27c11
         (673 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC019062-1|AAH19062.1|  456|Homo sapiens proteasome (prosome, ma...   232   7e-61
AK222679-1|BAD96399.1|  456|Homo sapiens proteasome 26S non-ATPa...   232   7e-61
AB003103-1|BAA19749.1|  456|Homo sapiens 26S proteasome subunit ...   232   7e-61
BC065826-1|AAH65826.1|  397|Homo sapiens proteasome (prosome, ma...   168   1e-41
AB023217-1|BAA76844.2| 1956|Homo sapiens KIAA1000 protein protein.     35   0.23 
AK027546-1|BAB55190.1|  536|Homo sapiens protein ( Homo sapiens ...    32   2.1  

>BC019062-1|AAH19062.1|  456|Homo sapiens proteasome (prosome,
           macropain) 26S subunit, non-ATPase, 12 protein.
          Length = 456

 Score =  232 bits (568), Expect = 7e-61
 Identities = 112/181 (61%), Positives = 146/181 (80%)
 Frame = +3

Query: 120 DIGGLDASGKIIKMEVDYSATCDEKLPLWKSWAAQGKIQEAIDQLLALEKQTRTGADMVS 299
           D G   A G+I+KMEVDYSAT D++LP     A +G++QE I+ LL+LEKQTRT +DMVS
Sbjct: 3   DGGSERADGRIVKMEVDYSATVDQRLPECAKLAKEGRLQEVIETLLSLEKQTRTASDMVS 62

Query: 300 TSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKI 479
           TSRILV VV++ +EAK W  LN++I++LSKRRSQLKQAV KMVQ+C TYV++  D   K+
Sbjct: 63  TSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKL 122

Query: 480 KLIETLRTITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYGSMDRGKK 659
           +LI+TLR +TEGKIYVE+ERARLT  LA I+E+ G+V EAA I+QELQVETYGSM++ ++
Sbjct: 123 RLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKER 182

Query: 660 L 662
           +
Sbjct: 183 V 183


>AK222679-1|BAD96399.1|  456|Homo sapiens proteasome 26S non-ATPase
           subunit 12 isoform 1 variant protein.
          Length = 456

 Score =  232 bits (568), Expect = 7e-61
 Identities = 112/181 (61%), Positives = 146/181 (80%)
 Frame = +3

Query: 120 DIGGLDASGKIIKMEVDYSATCDEKLPLWKSWAAQGKIQEAIDQLLALEKQTRTGADMVS 299
           D G   A G+I+KMEVDYSAT D++LP     A +G++QE I+ LL+LEKQTRT +DMVS
Sbjct: 3   DGGSERADGRIVKMEVDYSATVDQRLPECAKLAKEGRLQEVIETLLSLEKQTRTASDMVS 62

Query: 300 TSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKI 479
           TSRILV VV++ +EAK W  LN++I++LSKRRSQLKQAV KMVQ+C TYV++  D   K+
Sbjct: 63  TSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKL 122

Query: 480 KLIETLRTITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYGSMDRGKK 659
           +LI+TLR +TEGKIYVE+ERARLT  LA I+E+ G+V EAA I+QELQVETYGSM++ ++
Sbjct: 123 RLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKER 182

Query: 660 L 662
           +
Sbjct: 183 V 183


>AB003103-1|BAA19749.1|  456|Homo sapiens 26S proteasome subunit p55
           protein.
          Length = 456

 Score =  232 bits (568), Expect = 7e-61
 Identities = 112/181 (61%), Positives = 146/181 (80%)
 Frame = +3

Query: 120 DIGGLDASGKIIKMEVDYSATCDEKLPLWKSWAAQGKIQEAIDQLLALEKQTRTGADMVS 299
           D G   A G+I+KMEVDYSAT D++LP     A +G++QE I+ LL+LEKQTRT +DMVS
Sbjct: 3   DGGSERADGRIVKMEVDYSATVDQRLPECAKLAKEGRLQEVIETLLSLEKQTRTASDMVS 62

Query: 300 TSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKI 479
           TSRILV VV++ +EAK W  LN++I++LSKRRSQLKQAV KMVQ+C TYV++  D   K+
Sbjct: 63  TSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKL 122

Query: 480 KLIETLRTITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYGSMDRGKK 659
           +LI+TLR +TEGKIYVE+ERARLT  LA I+E+ G+V EAA I+QELQVETYGSM++ ++
Sbjct: 123 RLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKER 182

Query: 660 L 662
           +
Sbjct: 183 V 183


>BC065826-1|AAH65826.1|  397|Homo sapiens proteasome (prosome,
           macropain) 26S subunit, non-ATPase, 12 protein.
          Length = 397

 Score =  168 bits (409), Expect = 1e-41
 Identities = 80/124 (64%), Positives = 104/124 (83%)
 Frame = +3

Query: 291 MVSTSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKE 470
           MVSTSRILV VV++ +EAK W  LN++I++LSKRRSQLKQAV KMVQ+C TYV++  D  
Sbjct: 1   MVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLP 60

Query: 471 TKIKLIETLRTITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYGSMDR 650
            K++LI+TLR +TEGKIYVE+ERARLT  LA I+E+ G+V EAA I+QELQVETYGSM++
Sbjct: 61  IKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEK 120

Query: 651 GKKL 662
            +++
Sbjct: 121 KERV 124


>AB023217-1|BAA76844.2| 1956|Homo sapiens KIAA1000 protein protein.
          Length = 1956

 Score = 35.1 bits (77), Expect = 0.23
 Identities = 33/133 (24%), Positives = 59/133 (44%)
 Frame = +3

Query: 234  QEAIDQLLALEKQTRTGADMVSTSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQA 413
            QE  D +L L+ +  T A++      L+   +I  EA+    L++ +    +  S+L   
Sbjct: 904  QEKNDLILQLQAEQETLANVEEQCEWLIKS-KIQLEARV-KELSERVEEEEEINSELTAR 961

Query: 414  VVKMVQECYTYVDKTPDKETKIKLIETLRTITEGKIYVEVERARLTHILAKIREEEGNVA 593
              K+  EC+    +  D ET +   E  +  TE K+        LT  +  + E+   + 
Sbjct: 962  GRKLEDECFELKKEIDDLETMLVKSEKEKRTTEHKV------KNLTEEVEFLNEDISKLN 1015

Query: 594  EAAKIIQELQVET 632
             AAK++QE   +T
Sbjct: 1016 RAAKVVQEAHQQT 1028


>AK027546-1|BAB55190.1|  536|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14640 fis, clone NT2RP2001460, weakly similar to
           TRICHOHYALIN. ).
          Length = 536

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 28/122 (22%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
 Frame = +3

Query: 267 KQTRTGADMV-STSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYT 443
           +Q +T A +V   +++L+  ++I  + K   +  + +  +SK   QL     K   +   
Sbjct: 177 RQLQTQAKLVLEENKLLLEQLEIQ-QRKAKDSHQERLQEVSKLTKQLMLLEAKTHGQEKE 235

Query: 444 YVDKTPDKETKIKLIETLRTITEGKIYVEVERARLTHILAKI-REEEGNVAEAAKIIQEL 620
             +     E      + L+T ++GKI VEV ++ +  + +++ +EEE   AE  +++++L
Sbjct: 236 LAENREQLEILRAKCQELKTHSDGKIAVEVHKSIVNELKSQLQKEEEKERAEMEELMEKL 295

Query: 621 QV 626
            V
Sbjct: 296 TV 297


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,840,560
Number of Sequences: 237096
Number of extensions: 1694886
Number of successful extensions: 4475
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4475
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)