Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27c11
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40029-6|AAA81126.1|  490|Caenorhabditis elegans Proteasome regu...   159   1e-39
U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical pr...    34   0.11 
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr...    34   0.11 
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr...    34   0.11 
AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine re...    30   1.3  
Z93388-2|CAB07659.1|  369|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>U40029-6|AAA81126.1|  490|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 5 protein.
          Length = 490

 Score =  159 bits (387), Expect = 1e-39
 Identities = 83/173 (47%), Positives = 115/173 (66%)
 Frame = +3

Query: 144 GKIIKMEVDYSATCDEKLPLWKSWAAQGKIQEAIDQLLALEKQTRTGADMVSTSRILVTV 323
           G++ KME DYS   DE L L     AQ     A++ L  +EK TR GADM S +R++  +
Sbjct: 34  GRLFKMEQDYSKQVDEAL-LKARDIAQKDAVAAVESLNNIEKLTRLGADMKSNTRVVQYM 92

Query: 324 VQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIETLRT 503
            ++ FE + W  L + I+ LSK+R  +K A+ KMV++    +DK P ++ K+KLIETLRT
Sbjct: 93  TKLCFEGQKWDLLMETIMTLSKKRLLIKMAIAKMVRDAVAMIDKMPTEDLKMKLIETLRT 152

Query: 504 ITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYGSMDRGKKL 662
           +T GKIYVEVERARLT ++ K  E EG + EAA ++ ELQVETYGSM+  +K+
Sbjct: 153 VTAGKIYVEVERARLTSMVVKKLEREGKLDEAATMLLELQVETYGSMEMREKV 205


>U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical
           protein R07G3.3c protein.
          Length = 1316

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
 Frame = +3

Query: 363 NDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIETLRT-ITEGKIYVEVER 539
           N  +  + +R   + ++  +M++E   +  +  +   + +++E+ R  +T+  + +E   
Sbjct: 39  NRELTDMRERVEDVSRSNSRMLEELTRHAAEIKEHINRQRVLESTRNELTDKNLELETVV 98

Query: 540 ARLTHILAKIREEEGNVA--EAAKIIQELQVETYGSMDRGKKLS 665
           +RL     KI +EE + A   A K+ Q  QVET+   D  KKL+
Sbjct: 99  SRL-----KIEKEERDAAVVNATKLAQTAQVETFALKDEIKKLT 137


>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical
           protein R07G3.3a protein.
          Length = 1982

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
 Frame = +3

Query: 363 NDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIETLRT-ITEGKIYVEVER 539
           N  +  + +R   + ++  +M++E   +  +  +   + +++E+ R  +T+  + +E   
Sbjct: 39  NRELTDMRERVEDVSRSNSRMLEELTRHAAEIKEHINRQRVLESTRNELTDKNLELETVV 98

Query: 540 ARLTHILAKIREEEGNVA--EAAKIIQELQVETYGSMDRGKKLS 665
           +RL     KI +EE + A   A K+ Q  QVET+   D  KKL+
Sbjct: 99  SRL-----KIEKEERDAAVVNATKLAQTAQVETFALKDEIKKLT 137


>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical
           protein R07G3.3b protein.
          Length = 1987

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
 Frame = +3

Query: 363 NDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIETLRT-ITEGKIYVEVER 539
           N  +  + +R   + ++  +M++E   +  +  +   + +++E+ R  +T+  + +E   
Sbjct: 39  NRELTDMRERVEDVSRSNSRMLEELTRHAAEIKEHINRQRVLESTRNELTDKNLELETVV 98

Query: 540 ARLTHILAKIREEEGNVA--EAAKIIQELQVETYGSMDRGKKLS 665
           +RL     KI +EE + A   A K+ Q  QVET+   D  KKL+
Sbjct: 99  SRL-----KIEKEERDAAVVNATKLAQTAQVETFALKDEIKKLT 137


>AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine
           receptor, class t protein62 protein.
          Length = 322

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -3

Query: 194 FLITCCTIVHFHFYYFSTSIETADISVCSHFEKLKQNNLLNSVNVTIHKIIACVINSTNL 15
           F+  C + VH    YF  +  + +  +CS + K K     N   + I+ I ACV+   N 
Sbjct: 263 FMWICNSAVH-PIIYFIVNNNSTNSKICSKYSKFKMFEFFNYSTIPIN-INACVLARFNF 320

Query: 14  S 12
           S
Sbjct: 321 S 321


>Z93388-2|CAB07659.1|  369|Caenorhabditis elegans Hypothetical
           protein T10C6.2 protein.
          Length = 369

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -3

Query: 206 PQGQFLITCCTIVHFHFYYFSTSIETADISVCSHFEKLKQNNLLNS 69
           P G   I+CC     +   F+TS+    +     ++ LK N L  S
Sbjct: 101 PDGLLQISCCKFSDLYCGSFATSLAIFGVQFAYRYQVLKGNTLWTS 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,444,926
Number of Sequences: 27780
Number of extensions: 293777
Number of successful extensions: 883
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)