Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27c10
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    32   0.073
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   2.1  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   3.6  
SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces pom...    26   4.8  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    26   4.8  
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    26   6.3  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   6.3  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   8.3  

>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 32.3 bits (70), Expect = 0.073
 Identities = 23/75 (30%), Positives = 37/75 (49%)
 Frame = +3

Query: 378 IAREARLVEQGLLDPETLKKSPKKRVRTKGKIEVDEYDLQVIRRKIHEFYAFKKEVPTIN 557
           +A +A +V+Q +L+PE L K  K   RT+ K  V++   +   +K +    FK+    IN
Sbjct: 1   MAEDAPVVQQTMLEPEVLLKKRKVNERTR-KERVEQAIAKKEAQKKNRKETFKRAETFIN 59

Query: 558 KLLQILKEEINFKGS 602
              Q  +E I    S
Sbjct: 60  NYRQRERERIRLNRS 74


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = +3

Query: 534 KKEVPTINKLLQILKEEINFK-GSRETLRKILRK-NGFQFRKTKNNKDKE 677
           +KE+P + K++Q  + + N    +R+T +   R+   +QFR  KNNKD +
Sbjct: 632 RKEIPRVYKIIQ--QNQYNRSTNARKTSQLCGREARRWQFRTIKNNKDMQ 679


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 990

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 528  AFKKEVPTINKLLQILKEEINFKGSRETLRKILRKNGFQFRKTKN 662
            A +  +P ++ +L  LK + NF  +R  L + L + GF  R   N
Sbjct: 906  ASRSSLPLLSDILGKLKAQ-NFSATRACLTQSLEEEGFPSRNVSN 949


>SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = +3

Query: 387 EARLVEQGLLDPETLKKSPKKRV------RTKGKIEVDEYDL 494
           E+ ++E+ L  P+T +  PKK V         G+I VD+ DL
Sbjct: 238 ESDVLEEALKKPKTQEPKPKKNVDVDIIGNKVGRIHVDQQDL 279


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 24/81 (29%), Positives = 35/81 (43%)
 Frame = +3

Query: 267 KEFMDEEKRMQVPIIPLSKVYVRVSAATGVSERTVLNIAREARLVEQGLLDPETLKKSPK 446
           K++ DE++    PI  L  VYV+V+A     +  +     EA    +GL     L    K
Sbjct: 202 KKYGDEDQLKSNPIRHLYDVYVKVNADATEEDEKIQKDKAEAE--SKGLPYTPPLSLHDK 259

Query: 447 KRVRTKGKIEVDEYDLQVIRR 509
            R   K   + DE  L+V  R
Sbjct: 260 AREFFKRMEDGDEESLKVWAR 280


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/49 (22%), Positives = 25/49 (51%)
 Frame = +3

Query: 231 ITSEVREIILKVKEFMDEEKRMQVPIIPLSKVYVRVSAATGVSERTVLN 377
           +  ++ E  + +    D+E   +V ++P  + +V +S  T + +R  LN
Sbjct: 10  VVVQIDEFGIYIGNASDKEPTWKVDLVPYKQSWVPISIVTTIIQRYCLN 58


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 492  LQVIRRKIHEFYAFKKEVPTIN-KLLQILKEE 584
            LQ I RKI+ FY    +VPT + +LL+  K++
Sbjct: 1622 LQTILRKIYNFYYALYDVPTTDVELLKRTKDD 1653


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 288 KRMQVPIIPLSKVYVRVSAATGVSERTVLNIARE 389
           +RM +P++PL  V++R S  T    R+  ++ +E
Sbjct: 476 RRMGLPVLPLVCVFIRTSMQTWSMFRSTHSMKQE 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,498
Number of Sequences: 5004
Number of extensions: 47362
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)