Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27c10
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110...    29   3.8  
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    28   6.6  
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481...    28   6.6  
01_05_0762 + 24990915-24990970,24991076-24991592,24991676-249917...    28   6.6  
05_01_0580 + 5210002-5210170,5210466-5210524,5210883-5211668,521...    28   8.7  
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067     28   8.7  

>09_01_0076 +
           1105331-1105453,1106559-1106705,1107046-1107195,
           1107272-1107531,1107897-1108084,1108187-1108311,
           1108485-1108521,1108802-1108893,1109023-1109133,
           1109242-1109352,1109576-1109669,1109833-1109945,
           1110316-1110411,1110510-1110617,1110665-1110814,
           1110910-1110990,1111205-1111276,1111553-1111646,
           1111759-1111787,1111870-1111967,1112065-1112160,
           1112399-1112620,1113002-1113158,1113472-1113627,
           1113703-1113930
          Length = 1045

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
 Frame = +3

Query: 447 KRVRTKGKIEVDEYDLQVI--RRKIHEFYAFKKEVPTINKLLQILKEEIN-FKGSRETLR 617
           K +  +  + + + DLQ++  ++K        KE    ++  + L+EEI+  K  +  L+
Sbjct: 580 KTLEAQYMLVIQDLDLQILDLKKKQENQVQLLKEKQKSDEAAKKLQEEIHSIKAQKVQLQ 639

Query: 618 KILRKNGFQFRKTKNNKDKE 677
             +++   QFR+ K  ++KE
Sbjct: 640 HKIKQEAEQFRQWKATREKE 659


>04_03_0582 +
           17528335-17529790,17529913-17531651,17531814-17532035,
           17532062-17533525
          Length = 1626

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +3

Query: 474 EVDEYDLQVIRRKIHEFYAFKKEVPTINKLLQILKEEINFKGSRETLRKILR 629
           +V E D+Q      H+F+  + ++P    L ++L  +I  KG+ E  R  LR
Sbjct: 193 KVREVDVQEDGCNKHDFFRIRVDLPVNRPLKRMLAIKIKVKGAEEIRRFNLR 244


>01_06_1656 + 38946922-38947542,38947640-38947739,38948045-38948189,
            38948868-38948991,38949443-38949960,38950111-38950458,
            38950557-38950638,38951309-38951707,38951790-38951927,
            38952063-38952108,38952200-38952369
          Length = 896

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
 Frame = +3

Query: 210  HLKMPKNITSEVREIILKVKEFMDEEKRMQVPIIPLSKVYVRVSAATGVSERTVLN-IAR 386
            H K P    S+++  + ++ EF+D   R QV    LSK+ +  S A+    +++    ++
Sbjct: 798  HQKFPNVSKSQLKNKVREISEFVD--NRWQVKKEVLSKLGLSSSPASSKKPKSIATYFSK 855

Query: 387  EARLVEQGLLDPETLKKSPKKRVRTKGKIEVDEYDL 494
                 E+ +L    L+   K      G  ++   +L
Sbjct: 856  RCLPPEEAILASPELRLKSKTTQNVNGDTDIPRINL 891


>01_05_0762 +
           24990915-24990970,24991076-24991592,24991676-24991753,
           24993678-24993743,24994819-24994943,24995414-24995612,
           24995909-24996137,24996259-24996425,24996526-24996735,
           24997245-24997355,24997436-24997612,24997826-24998284,
           24998676-24998966
          Length = 894

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 444 KKRVRTKGKIEVDEYDLQVIRRKIHEFYAFKKEVPTINKLLQI 572
           ++ +R  GKI + +YD+  I  ++ +F    KE  T   L+ +
Sbjct: 440 RESIRAVGKIALQQYDVNAIVDRLLQFLEMDKEYVTAETLVLV 482


>05_01_0580 +
           5210002-5210170,5210466-5210524,5210883-5211668,
           5211898-5212737
          Length = 617

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
 Frame = +3

Query: 234 TSEVREIILKVKEFMDEEKRMQVPIIPLSKVYVRVSAATGVSERTVLNIAREARLVEQGL 413
           T E +   LK++    E +R+Q  +   SK+   + AA    +     + ++A   ++ +
Sbjct: 203 TVESKLYTLKIESLQSENERLQAQLTESSKLASELEAARMKCKLLKKKLRQDAEQAKERI 262

Query: 414 LDPETLKKSPK-KRVRTKGKIEVDEYDLQVIRRKIHEFYAFKKEVPTINKLLQ 569
              + +  S + K + T+GK      +++    K+ E     +E+  +N  LQ
Sbjct: 263 ASLQEMADSWQCKEIITEGKFSA---EVEEKLSKLEELENEARELRVVNSRLQ 312


>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
          Length = 1064

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 609 TLRKILRKNGFQFRKTKNNKDKEQAPQQPTS---VPPMVPPY 725
           ++ +++R+ GF     K+N + E A    TS    PP +PP+
Sbjct: 200 SVSRVMREAGFSSSTVKSNLEGESALMMSTSSSPPPPAIPPH 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,461,614
Number of Sequences: 37544
Number of extensions: 256861
Number of successful extensions: 715
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)