Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27c08
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    43   5e-05
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    27   3.2  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    26   5.6  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    25   9.8  

>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
 Frame = +1

Query: 433 KEKMAK-PETAKPVPSKVVIEEPPLEENLNRI-QLDGELAQTVDEALAILS-----DKPE 591
           KE+M   P        K   +   L+  LN   Q     A+ +D+AL +LS      K +
Sbjct: 65  KEEMESLPSKGGKGSKKAAKKNSSLDAFLNETPQTASYSARNIDDALDLLSLNNSSSKDK 124

Query: 592 VDRHPEKRLKAAFTAFEQINLP 657
           +DRHPE+R KAA T ++Q  LP
Sbjct: 125 IDRHPERRFKAALTEYKQSRLP 146


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = +1

Query: 85  SFYLVPRTSQYLHKMPKKFTGENSKAVAARQRKENAKLEKDQKTK 219
           +FY+  + +   H  P+K T         R+RK+  + + +++ K
Sbjct: 140 AFYIAQQVAAIEHPPPRKMTSSEKTRSENRERKKRWREQNEERNK 184


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = -3

Query: 301 FFLALPFSVVSS*VYHHYLPILHPLQLSLFFDLFPV*HFLCAVELL--QLCYSLQ*ISL 131
           FF  L     S  +YH  L  L P    L  D+F      C  EL+  + CY L  +SL
Sbjct: 144 FFAILCVVCDSLEIYHSNLSTLLPNNFELCIDVFQKCTTQCQRELIIKKACYLLSDVSL 202


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 148 ENSKAVAARQRKENAKLEKDQKTKKAVED 234
           E  K   A+ +  N KLEKD+++ K +++
Sbjct: 542 EQQKKAKAKVKAMNKKLEKDKQSGKVLDE 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,164
Number of Sequences: 5004
Number of extensions: 36803
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)