Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27c08
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0791 + 28088237-28088809,28089311-28089430,28089585-280896... 43 2e-04
03_01_0226 + 1795120-1795686,1796040-1796171 37 0.017
07_03_0539 - 19237573-19239169,19239258-19239410,19239505-192395... 30 1.4
08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118... 29 2.5
12_01_0206 + 1555278-1555448,1555710-1555772,1556236-1556307,155... 29 3.3
12_01_1110 + 11756814-11757485,11757566-11757644,11757705-117579... 28 5.8
10_08_1019 - 22299800-22299946,22300040-22300109,22300930-223010... 28 7.7
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665... 28 7.7
>04_04_0791 +
28088237-28088809,28089311-28089430,28089585-28089662,
28089808-28089938,28090390-28090435,28090529-28090636
Length = 351
Score = 43.2 bits (97), Expect = 2e-04
Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Frame = +1
Query: 448 KPETAKPVPSKVVIEEP----PLEENLNRIQLDGELAQTVDEALAILS--DKP---EVDR 600
+PE AK ++ EE L N NR E A++VDEA+A +S D D+
Sbjct: 122 EPEAAKKRAARTAEEEEYERVVLVANTNRDDSIIE-ARSVDEAIARMSLVDSEGALPADK 180
Query: 601 HPEKRLKAAFTAFEQINLP 657
HPE+RLKA+F AFE+ LP
Sbjct: 181 HPERRLKASFKAFEEAELP 199
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +1
Query: 127 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWED 249
MPKK G NSKA AAR+R+ A+ ++ + ++A E+ W +
Sbjct: 1 MPKKM-GVNSKAEAARERRSVAEADRRDRVERAKEEEYWRE 40
>03_01_0226 + 1795120-1795686,1796040-1796171
Length = 232
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +1
Query: 127 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWE 246
MPKK G N+KA AAR+R+ A+ ++ + +A E+A W+
Sbjct: 1 MPKKM-GVNTKAEAARERRSAAEADRRDRDARAKEEAYWQ 39
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Frame = +1
Query: 544 AQTVDEALAILSDKPEV----DRHPEKRLKAAFTAFEQINL 654
A++V++A+ +S E DRHPE+RLK ++ AFE+ L
Sbjct: 156 ARSVEDAIVKMSIAAEPALPPDRHPERRLKVSYKAFEEAEL 196
>07_03_0539 - 19237573-19239169,19239258-19239410,19239505-19239566,
19239855-19240103,19240248-19240337,19240453-19240632,
19240713-19240942,19241558-19241735,19242327-19242432,
19242786-19242883,19243683-19243813,19243908-19244087,
19244179-19244443,19244557-19244627,19244707-19244922,
19245147-19245294
Length = 1317
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 493 EPPLEENLNRIQLDGELAQTVDEALAILS--DKPEVDRHPEKRLKAAFTAFEQINLPTS 663
E PL+ L ++ L GE + +DE L I+S P V P+ R + + A E+ +P S
Sbjct: 1041 EFPLDPTLAKMLLMGEQLECLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPES 1099
>08_02_0550 +
18509365-18509589,18509668-18510644,18510828-18511802,
18511885-18512142,18512216-18512326,18512418-18512496,
18512595-18512687,18512773-18512958
Length = 967
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/65 (24%), Positives = 35/65 (53%)
Frame = +1
Query: 418 QISQAKEKMAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVD 597
Q +Q ++ +PE A P+P + E+P L++ ++ + E+ Q ++ + ++ V+
Sbjct: 529 QSNQPEKHADEPELAHPMPEQPEPEQPMLDK--AELEREEEVVQEREKEVVQEREEEAVE 586
Query: 598 RHPEK 612
H EK
Sbjct: 587 EHKEK 591
>12_01_0206 +
1555278-1555448,1555710-1555772,1556236-1556307,
1556430-1556537,1556644-1556724,1556861-1556914,
1557020-1557145,1557228-1557317,1557603-1557725,
1557831-1557938,1558287-1558400,1558530-1558586,
1558667-1558741,1558915-1558989
Length = 438
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +1
Query: 451 PETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAF 630
P T +P ++E+ ++ R + D + T+D+ A+ +D E +K A
Sbjct: 253 PMTRVTIPE--ILEDEWFKKGYKRPEFDEKYDTTLDDVYAVFNDSEEHHVTEKKEEPEAL 310
Query: 631 TAFEQINL 654
AFE I++
Sbjct: 311 NAFELISM 318
>12_01_1110 +
11756814-11757485,11757566-11757644,11757705-11757991,
11758072-11758131,11758311-11758976
Length = 587
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +1
Query: 442 MAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVDRHP 606
+A + AK SK+ + P ++ ++ + + EL + VD+A A +SD PE D+ P
Sbjct: 275 LAPKKKAKKKKSKLADDLPAVDPSIEQALDEEELREDVDQAAAEMSD-PE-DKTP 327
>10_08_1019 -
22299800-22299946,22300040-22300109,22300930-22301066,
22301142-22301195,22301638-22301694,22301814-22301846,
22301942-22302067,22302162-22302815,22303042-22303166,
22303770-22303935
Length = 522
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 502 LEENLNRIQLDGELAQTVDEALAILSDKPEVDRH 603
+EE R +L GE+A+ +D + I S E RH
Sbjct: 358 IEEQTKRFELKGEIAKHIDIRVKISSHHVEAVRH 391
>07_02_0028 +
11964941-11964991,11965259-11966101,11966249-11966560,
11966640-11967073,11967500-11967941
Length = 693
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = +1
Query: 421 ISQAKEKMAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSD 582
++ A +K AK + KP K + + P L+ + + + ++ + VD+A+A +SD
Sbjct: 471 LALAPKKKAKFKKTKPT-DKPIDDLPALDPTIEQALDEEDIGEDVDQAVAEMSD 523
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,455,461
Number of Sequences: 37544
Number of extensions: 224035
Number of successful extensions: 693
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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