Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27c07
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 40 4e-04
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 29 0.81
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 27 2.5
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 26 4.3
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.7
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 5.7
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 5.7
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 5.7
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 5.7
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 26 5.7
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 5.7
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 5.7
SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein Bqt1|Sc... 26 5.7
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 5.7
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 5.7
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 5.7
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 5.7
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 5.7
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 7.6
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ... 25 7.6
SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyc... 25 7.6
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 25 10.0
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 39.5 bits (88), Expect = 4e-04
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Frame = +3
Query: 333 AHYEELGSAITNYVYDILQTQIGLQKLPIPKDSNDGTF---IFVSKDYDKKDVLLILIHG 503
AH + L I Y L + +PI +DS F + S ++ +KD LL+++H
Sbjct: 430 AHVDRLHDVIRTYQAKKLFEDWKITNMPILRDSVSNVFNNQVLCSSNFFQKDNLLVIVHE 489
Query: 504 SGVVRAGQWARS--LIINESLDKGSQIPYIKKALAKDYGVVVLN 629
S V + + L +N+SL Y++ A+ +D+G++ +N
Sbjct: 490 SPRVLGNGTSETNVLNLNDSLLVDPVSLYVEWAMQQDWGLIDIN 533
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 28.7 bits (61), Expect = 0.81
Identities = 12/52 (23%), Positives = 29/52 (55%)
Frame = +1
Query: 286 MNHSNLL*AMITRNAKLIMKNLAQQSPIMFMIFFRLRLDCKSYQSQRIQMME 441
M H ++ ++ NA + + N Q+P+M + F DC+++ Q +++++
Sbjct: 258 MGHIEMIKLLLRANADIGVCNRLSQTPLMRSVIFTNNYDCQTF-GQVLELLQ 308
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 453 VSKDYDKKDVLLILIHGSGVVRAGQWARSLIINESLDKGSQIPYIKK 593
+ K Y+ D L+ ++ G + + A LIINE LD G I Y+K+
Sbjct: 650 ICKQYNYLDELVYIL---GRMGNNKEALMLIINELLDIGRAIRYVKE 693
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 4.3
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 333 AHYEELGSAITNYVYDILQTQI 398
+H+ +L S++ N VYD+L + I
Sbjct: 65 SHFADLSSSVRNKVYDLLTSNI 86
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 293 WFICWLSISSNFSYLTI*IKYVSQFLHSFRSLHFVMHFISTRCNRLS 153
+ + +LS S +FS+L + + SF LHF+ F C LS
Sbjct: 122 FLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLS 168
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 351 GSAITNYVYDILQTQIGLQKLPIPKDSNDGTFIFVSK 461
GSA N++ D L ++I + PIPKDS D + FV++
Sbjct: 820 GSA--NHIADAL-SRIVDETEPIPKDSEDNSINFVNQ 853
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 351 GSAITNYVYDILQTQIGLQKLPIPKDSNDGTFIFVSK 461
GSA N++ D L ++I + PIPKDS D + FV++
Sbjct: 820 GSA--NHIADAL-SRIVDETEPIPKDSEDNSINFVNQ 853
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 351 GSAITNYVYDILQTQIGLQKLPIPKDSNDGTFIFVSK 461
GSA N++ D L ++I + PIPKDS D + FV++
Sbjct: 820 GSA--NHIADAL-SRIVDETEPIPKDSEDNSINFVNQ 853
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 351 GSAITNYVYDILQTQIGLQKLPIPKDSNDGTFIFVSK 461
GSA N++ D L ++I + PIPKDS D + FV++
Sbjct: 820 GSA--NHIADAL-SRIVDETEPIPKDSEDNSINFVNQ 853
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 25.8 bits (54), Expect = 5.7
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Frame = +3
Query: 507 GVVRAGQWARSLIINESLDK---GSQIPYIKKALAKDYGVVVLNTND 638
G+ R+ WA D S P IK A D V LNTND
Sbjct: 242 GMQRSATWAPGYNYPSKFDSIPFASASPKIKAAFPFDPNVYALNTND 288
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 351 GSAITNYVYDILQTQIGLQKLPIPKDSNDGTFIFVSK 461
GSA N++ D L ++I + PIPKDS D + FV++
Sbjct: 820 GSA--NHIADAL-SRIVDETEPIPKDSEDNSINFVNQ 853
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 351 GSAITNYVYDILQTQIGLQKLPIPKDSNDGTFIFVSK 461
GSA N++ D L ++I + PIPKDS D + FV++
Sbjct: 820 GSA--NHIADAL-SRIVDETEPIPKDSEDNSINFVNQ 853
>SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein
Bqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 115 YARRYQKYDCDLTESRLHLVLIKCITKWR 201
++RR Q Y ++ H+ L+K + KWR
Sbjct: 99 WSRRLQGYQSITVQNGSHVPLVKRLEKWR 127
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 351 GSAITNYVYDILQTQIGLQKLPIPKDSNDGTFIFVSK 461
GSA N++ D L ++I + PIPKDS D + FV++
Sbjct: 820 GSA--NHIADAL-SRIVDETEPIPKDSEDNSINFVNQ 853
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 351 GSAITNYVYDILQTQIGLQKLPIPKDSNDGTFIFVSK 461
GSA N++ D L ++I + PIPKDS D + FV++
Sbjct: 820 GSA--NHIADAL-SRIVDETEPIPKDSEDNSINFVNQ 853
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 351 GSAITNYVYDILQTQIGLQKLPIPKDSNDGTFIFVSK 461
GSA N++ D L ++I + PIPKDS D + FV++
Sbjct: 820 GSA--NHIADAL-SRIVDETEPIPKDSEDNSINFVNQ 853
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 351 GSAITNYVYDILQTQIGLQKLPIPKDSNDGTFIFVSK 461
GSA N++ D L ++I + PIPKDS D + FV++
Sbjct: 820 GSA--NHIADAL-SRIVDETEPIPKDSEDNSINFVNQ 853
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 351 GSAITNYVYDILQTQIGLQKLPIPKDSNDGTFIFVSK 461
GSA N++ D L ++I + PIPKDS D + FV++
Sbjct: 820 GSA--NHIADAL-SRIVDETEPIPKDSEDNSINFVNQ 853
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 570 SQIPYIKKALAKDYGVVVLNTNDNHTADG 656
SQ+ ++ + YG ++ D HT DG
Sbjct: 1679 SQVQQLRSQFQRKYGSIIFKHLDIHTVDG 1707
>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 227
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = -3
Query: 359 C*AKFFIMSLAFLVIIAHNKLEWFICWLSISSNFSYLTI*IKYVSQFLHSFRSLHFVM 186
C +FIM++ ++I + F WLS S FS+ I + + SF+ + F++
Sbjct: 46 CRLVYFIMAVMVFLVI----FDGFPFWLSAFSIFSHYIYKINFDTFPFFSFKRMRFLL 99
>SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 7.6
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Frame = +3
Query: 174 ANKVHYKMEGTKTMKELGYIFDSNGQVRKIGADGQPTDEP--FQFVVSND--HQECQAHY 341
A+ + ME +K GY DS G + G D+P +QF D ++E +A
Sbjct: 14 ASNQNRSMEAHNVLKNAGYQVDSFGTGSAVRLPGPSIDKPNIYQFGYPYDEIYKELEAQD 73
Query: 342 EELGSAITNYVYDILQTQIGLQKLPIPKDSNDGTFIFV 455
L +A N + +L +++ P D + V
Sbjct: 74 SRLYTA--NGLLKMLDRNRRIKRAPCRWQDQDSIYNIV 109
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 75 PPSLLQFMNVIRAVRTSISKVRLRPHRKSIASSANKV 185
PPS + ++ +SIS R RP R S +A+K+
Sbjct: 212 PPSRPDSTSTTKSKTSSISSARARPIRASSRPTASKL 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,734
Number of Sequences: 5004
Number of extensions: 59633
Number of successful extensions: 137
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -