Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27c07
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1200 - 35362412-35362432,35362526-35362715,35362799-353628...    29   3.4  
06_03_0562 + 22188780-22188910,22189848-22190415                       28   7.8  

>01_06_1200 -
           35362412-35362432,35362526-35362715,35362799-35362899,
           35362985-35363116,35363204-35363302,35363493-35363568,
           35363649-35363941,35364032-35364160,35364332-35364480,
           35364562-35364633,35364728-35364776,35365039-35365107,
           35365201-35365256,35365357-35365429,35365508-35365584,
           35365847-35365934,35366086-35366259,35366358-35366473,
           35366681-35366984,35367084-35367146,35367224-35367286,
           35367393-35367506,35368672-35368675,35368894-35368952,
           35369024-35369098,35369691-35369798,35372331-35372792
          Length = 1071

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 310 LTTNWNGSSVGCPSAPIFLT*PFESNMYPSSFIVFVPS 197
           LTT W+ + VGCP+  + +  P +S +        +PS
Sbjct: 51  LTTTWSSAGVGCPTKKLVIVSP-DSELKRGRIYFLIPS 87


>06_03_0562 + 22188780-22188910,22189848-22190415
          Length = 232

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 432 NDGTFIFVSKDYDKKDVLLILIHGSGVVRAGQWARSLIINESLDKG 569
           NDGT+I VS+  D   +  IL  G G     +W +   I   + KG
Sbjct: 40  NDGTWILVSEYVDNDSLDKILFGGQGSQALLEWKQRFNIALEVAKG 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,862,829
Number of Sequences: 37544
Number of extensions: 357533
Number of successful extensions: 859
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)