Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27c07
         (676 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061267-1|AAL28815.1|  325|Drosophila melanogaster LD19518p pro...   119   3e-27
AE014297-1479|AAF54777.1|  309|Drosophila melanogaster CG10038-P...   119   3e-27
AE014297-1478|AAF54778.2|  325|Drosophila melanogaster CG10038-P...   119   3e-27
X97196-1|CAA65830.1| 3429|Drosophila melanogaster hypothetical p...    29   7.7  
AY061516-1|AAL29064.1|  418|Drosophila melanogaster LD46870p pro...    29   7.7  
AE014297-14|AAF52166.2|  418|Drosophila melanogaster CG14641-PA ...    29   7.7  

>AY061267-1|AAL28815.1|  325|Drosophila melanogaster LD19518p
           protein.
          Length = 325

 Score =  119 bits (287), Expect = 3e-27
 Identities = 63/146 (43%), Positives = 89/146 (60%), Gaps = 4/146 (2%)
 Frame = +3

Query: 213 MKELGYIFDSNGQVRKIG-ADGQPTDEPFQFVVSNDHQECQAHYEELGSAITNYVYDILQ 389
           +K  GY FD  G +RK+  A G+P  E F + VS+D  E + HY++L + I   VY +L+
Sbjct: 34  LKNFGYAFDGEGVLRKVDPATGEPGKELFSYNVSDDAAENEKHYQKLANQIPEIVYALLE 93

Query: 390 TQIGLQKLPIPKDS--NDGTFIFVSK-DYDKKDVLLILIHGSGVVRAGQWARSLIINESL 560
              GL +  IP D      +F+F       +   LL+LIHGSG V+AGQWARSLIIN SL
Sbjct: 94  KN-GLSRTYIPFDQPPERSSFVFSQPAKLSQSKKLLVLIHGSGYVKAGQWARSLIINNSL 152

Query: 561 DKGSQIPYIKKALAKDYGVVVLNTND 638
           D G+Q+PY+++A    Y +++ N ND
Sbjct: 153 DHGTQLPYVRQAQKLGYDLLITNAND 178


>AE014297-1479|AAF54777.1|  309|Drosophila melanogaster CG10038-PB,
           isoform B protein.
          Length = 309

 Score =  119 bits (287), Expect = 3e-27
 Identities = 63/146 (43%), Positives = 89/146 (60%), Gaps = 4/146 (2%)
 Frame = +3

Query: 213 MKELGYIFDSNGQVRKIG-ADGQPTDEPFQFVVSNDHQECQAHYEELGSAITNYVYDILQ 389
           +K  GY FD  G +RK+  A G+P  E F + VS+D  E + HY++L + I   VY +L+
Sbjct: 18  LKNFGYAFDGEGVLRKVDPATGEPGKELFSYNVSDDAAENEKHYQKLANQIPEIVYALLE 77

Query: 390 TQIGLQKLPIPKDS--NDGTFIFVSK-DYDKKDVLLILIHGSGVVRAGQWARSLIINESL 560
              GL +  IP D      +F+F       +   LL+LIHGSG V+AGQWARSLIIN SL
Sbjct: 78  KN-GLSRTYIPFDQPPERSSFVFSQPAKLSQSKKLLVLIHGSGYVKAGQWARSLIINNSL 136

Query: 561 DKGSQIPYIKKALAKDYGVVVLNTND 638
           D G+Q+PY+++A    Y +++ N ND
Sbjct: 137 DHGTQLPYVRQAQKLGYDLLITNAND 162


>AE014297-1478|AAF54778.2|  325|Drosophila melanogaster CG10038-PA,
           isoform A protein.
          Length = 325

 Score =  119 bits (287), Expect = 3e-27
 Identities = 63/146 (43%), Positives = 89/146 (60%), Gaps = 4/146 (2%)
 Frame = +3

Query: 213 MKELGYIFDSNGQVRKIG-ADGQPTDEPFQFVVSNDHQECQAHYEELGSAITNYVYDILQ 389
           +K  GY FD  G +RK+  A G+P  E F + VS+D  E + HY++L + I   VY +L+
Sbjct: 34  LKNFGYAFDGEGVLRKVDPATGEPGKELFSYNVSDDAAENEKHYQKLANQIPEIVYALLE 93

Query: 390 TQIGLQKLPIPKDS--NDGTFIFVSK-DYDKKDVLLILIHGSGVVRAGQWARSLIINESL 560
              GL +  IP D      +F+F       +   LL+LIHGSG V+AGQWARSLIIN SL
Sbjct: 94  KN-GLSRTYIPFDQPPERSSFVFSQPAKLSQSKKLLVLIHGSGYVKAGQWARSLIINNSL 152

Query: 561 DKGSQIPYIKKALAKDYGVVVLNTND 638
           D G+Q+PY+++A    Y +++ N ND
Sbjct: 153 DHGTQLPYVRQAQKLGYDLLITNAND 178


>X97196-1|CAA65830.1| 3429|Drosophila melanogaster hypothetical
            protein protein.
          Length = 3429

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 396  SESEEYHKHNW*LLSQVLHNELGIPG 319
            SE + YH   W + S++ H+ + IPG
Sbjct: 1226 SEGDAYHWSEWKMFSRIQHSAIEIPG 1251


>AY061516-1|AAL29064.1|  418|Drosophila melanogaster LD46870p
           protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 453 VSKDYDKKDVLLILIHGSGVVRAGQWARSLIINESLDK-GSQIPYIKK 593
           V+K+Y  +++   L  G G   AG   RSL  NE L K     PY K+
Sbjct: 112 VNKEYYIQNIDAQLQDGDGTEAAGAVGRSLAANEMLSKLARTAPYYKR 159


>AE014297-14|AAF52166.2|  418|Drosophila melanogaster CG14641-PA
           protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 453 VSKDYDKKDVLLILIHGSGVVRAGQWARSLIINESLDK-GSQIPYIKK 593
           V+K+Y  +++   L  G G   AG   RSL  NE L K     PY K+
Sbjct: 112 VNKEYYIQNIDAQLQDGDGTEAAGAVGRSLAANEMLSKLARTAPYYKR 159


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,478,475
Number of Sequences: 53049
Number of extensions: 639790
Number of successful extensions: 1493
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)