Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27c07
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-30|CAA22091.1|  313|Caenorhabditis elegans Hypothetical...   129   2e-30
Z93379-10|CAB07594.1|  508|Caenorhabditis elegans Hypothetical p...    27   9.2  
Z92830-17|CAB07364.1|  508|Caenorhabditis elegans Hypothetical p...    27   9.2  
Z66567-9|CAA91495.1| 1268|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z66562-7|CAA91467.1| 1268|Caenorhabditis elegans Hypothetical pr...    27   9.2  
X65055-1|CAA46191.1| 1254|Caenorhabditis elegans P-glycoprotein ...    27   9.2  

>AL033514-30|CAA22091.1|  313|Caenorhabditis elegans Hypothetical
           protein Y75B8A.31 protein.
          Length = 313

 Score =  129 bits (312), Expect = 2e-30
 Identities = 72/153 (47%), Positives = 101/153 (66%), Gaps = 5/153 (3%)
 Frame = +3

Query: 210 TMKELGYIFDSNGQVRKIGADGQPTDEPFQFVVSNDHQECQAHYEELGSAITNYVYDILQ 389
           ++ +LGY FD  G ++      +   +PF+F    D       YEELG A+   VY++L+
Sbjct: 3   SLAKLGYFFDEKGVLKT-----EKDKKPFKFTTQED-------YEELGEAVDLEVYELLE 50

Query: 390 TQIGLQ----KLPIPKDSN-DGTFIFVSKDYDKKDVLLILIHGSGVVRAGQWARSLIINE 554
           T+ GL+    KLP   D + D +FIFVSK++ K   LL+LIHGSGVVRAGQWAR LIIN+
Sbjct: 51  TRCGLKRKALKLPGKTDEDEDLSFIFVSKNFKKAANLLVLIHGSGVVRAGQWARRLIIND 110

Query: 555 SLDKGSQIPYIKKALAKDYGVVVLNTNDNHTAD 653
           +L+ G+QIPYI++A+   +GVVV+NTN N + D
Sbjct: 111 NLECGTQIPYIERAIENGWGVVVMNTNLNESKD 143


>Z93379-10|CAB07594.1|  508|Caenorhabditis elegans Hypothetical
           protein F21H7.2 protein.
          Length = 508

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 408 KLPIPKDSNDGTFIFVSKDYDKKD 479
           K P  KD+     +F+S D DKKD
Sbjct: 128 KKPAKKDTGTAVAVFISDDEDKKD 151


>Z92830-17|CAB07364.1|  508|Caenorhabditis elegans Hypothetical
           protein F21H7.2 protein.
          Length = 508

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 408 KLPIPKDSNDGTFIFVSKDYDKKD 479
           K P  KD+     +F+S D DKKD
Sbjct: 128 KKPAKKDTGTAVAVFISDDEDKKD 151


>Z66567-9|CAA91495.1| 1268|Caenorhabditis elegans Hypothetical
           protein ZK455.7 protein.
          Length = 1268

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 414 PIPKDSNDGTFIFVSKDYDKKDVLL 488
           P P+DS  G F  V +D D KD +L
Sbjct: 21  PSPQDSYQGNFFDVFRDADYKDYIL 45


>Z66562-7|CAA91467.1| 1268|Caenorhabditis elegans Hypothetical
           protein ZK455.7 protein.
          Length = 1268

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 414 PIPKDSNDGTFIFVSKDYDKKDVLL 488
           P P+DS  G F  V +D D KD +L
Sbjct: 21  PSPQDSYQGNFFDVFRDADYKDYIL 45


>X65055-1|CAA46191.1| 1254|Caenorhabditis elegans P-glycoprotein C
           protein.
          Length = 1254

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 414 PIPKDSNDGTFIFVSKDYDKKDVLL 488
           P P+DS  G F  V +D D KD +L
Sbjct: 21  PSPQDSYQGNFFDVFRDADYKDYIL 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,803,242
Number of Sequences: 27780
Number of extensions: 331260
Number of successful extensions: 807
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)