Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27c04
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    28   0.090
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   1.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   3.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.9  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 27.9 bits (59), Expect = 0.090
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +2

Query: 509 FYNWRTVALQATIPYIISMAIIXTWPESPAWLISKQQYEQ-SEKNF 643
           F NW     +A  P + S+    TWP  P+  + K    Q  E NF
Sbjct: 260 FINWHEPIPEAYFPKLDSLVASRTWPFRPSGTVLKDINRQVDELNF 305


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 533 KRRSSNCKSVLRYGRASPLSIPKLFSYLNTF 441
           +RR+    SV +  RAS +  P  F  +N F
Sbjct: 411 RRRTPRYNSVSKIDRASRIVFPLFFLAINVF 441


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 496 YLRTLLQLEDRRFASNDSIYYFNGD 570
           Y+R ++  E R  A+ DS Y  N D
Sbjct: 323 YIREIMNKESRISAAIDSGYILNND 347


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 496 YLRTLLQLEDRRFASNDSIYYFNGD 570
           Y+R ++  E R  A+ DS Y  N D
Sbjct: 323 YIREIMNKESRISAAIDSGYILNND 347


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +1

Query: 379 WRYSRVRSHCHRRIQ*SEISRNVFKYENSFGMLRGDARPY 498
           W +  V  +  +    +E+SR   KY  S G++  +  PY
Sbjct: 180 WSWDEVMPYYLKSENNTELSRVGTKYHRSGGLMNVERFPY 219


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 548  PYIISMAIIXTWPESPAW 601
            PY+ + A I TW E   W
Sbjct: 1180 PYLRTAAAILTWNEKRFW 1197


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 74  AVLINMVGQGILLSYTTSLLPALQAPD 154
           A ++NM G G +   T   L A  AP+
Sbjct: 248 AAVMNMTGAGYVWIVTEQALDASNAPE 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,859
Number of Sequences: 438
Number of extensions: 4666
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)