Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27c01
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81531-3|CAB04315.1|  381|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical...    26   6.1  

>Z81531-3|CAB04315.1|  381|Caenorhabditis elegans Hypothetical
           protein F36D3.3 protein.
          Length = 381

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 594 FNIFIPYLVSCVIILKIILYP 656
           F   +  L+SC+II KI+LYP
Sbjct: 281 FICMVGMLISCIIISKILLYP 301


>AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.1 protein.
          Length = 350

 Score = 25.8 bits (54), Expect(2) = 6.1
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 84  PKPRPKSRPADLPRHRL-VQDQRIQIRLS 167
           PKP+P+ +P   P H+L ++   + +RL+
Sbjct: 315 PKPKPRPKPELKPNHKLKLKHLSLSVRLA 343



 Score = 20.6 bits (41), Expect(2) = 6.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 81  RPKPRPKSRP 110
           RPKP P+ +P
Sbjct: 298 RPKPNPRPKP 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,078,539
Number of Sequences: 27780
Number of extensions: 257832
Number of successful extensions: 712
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)