Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27b23
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    29   0.79 
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    27   2.4  
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce...    27   2.4  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    25   9.7  

>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 269 IIRKPRFSIREHISLNVLHTNRFFAISSCEKYENIFSIITKGRSRNSIL 123
           I+++P FSI EHI       N +    SC K+ N   ++ K +S   ++
Sbjct: 31  IVKEPSFSIEEHIKCFTTCINTYKPF-SCLKHANWALLLAKKKSDTGLI 78


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 166 IFSYFSHDEIAKNRLVCRTFNEIC 237
           IF+  S  ++   RLVCR F ++C
Sbjct: 41  IFTLISTPDLCNCRLVCRKFQQLC 64


>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 448 IPGKVIDEIKRVLTILDTSATPPRAHEVLQELRDISSMAIEHFDDKISPAF 600
           +P  VIDE++RVL  LD S      +  L  L  ++    +   D I  AF
Sbjct: 6   VPQAVIDELERVLVNLDKSNPLSFRYRALFSLNALAKKGDKRAVDAIYKAF 56


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = -3

Query: 299 VFKAIACRRSIIRKPRFSIREHIS----LNVLHTNRFFAISSCEKYENIFSIITKGRSRN 132
           V + I  +RS+   P+ S+ E +S    ++  H N   +  + E  EN   +  KG+   
Sbjct: 107 VEQEIKQKRSLSESPQESMLEKVSKKPKVSEAH-NEEISPENVETIENELDLPVKGKDEQ 165

Query: 131 SILSRYKNNNSVTT 90
           +    YKN N + T
Sbjct: 166 TTGLVYKNANDLLT 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,207
Number of Sequences: 5004
Number of extensions: 59084
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)