Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27b23
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0136 - 15122420-15122469,15123845-15124334,15124822-151249...    29   3.3  
08_02_0593 + 19078264-19078609,19078724-19082256                       29   3.3  
02_05_0966 - 33143383-33143464,33143946-33144087,33144136-331441...    28   5.8  
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428...    28   7.6  
03_05_0501 - 24944533-24945507                                         28   7.6  
01_06_0785 - 31985455-31988463                                         28   7.6  

>10_08_0136 -
           15122420-15122469,15123845-15124334,15124822-15124935,
           15125022-15125303,15125422-15125591,15125670-15125757,
           15126128-15126173,15126254-15126336,15126595-15126694,
           15127002-15127081,15127200-15127283,15127373-15127531,
           15128617-15128772,15129634-15130197
          Length = 821

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = -3

Query: 275 RSIIRKPRFSIREHISLNVLHTNRFFAISSCEKYENIFSIITKGRSRNSILSRYKNNNSV 96
           + I++     +  H+  +V+ T R  AI++C+ +E+I   + KGR     ++  K+N+  
Sbjct: 465 KRIVKSKNSYLERHLG-HVISTIRS-AIANCDAFESIAEQLKKGRLEELAVANMKSNDGD 522

Query: 95  T 93
           T
Sbjct: 523 T 523


>08_02_0593 + 19078264-19078609,19078724-19082256
          Length = 1292

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
 Frame = +1

Query: 94  VTELLFLYRDKME-FLDLP-LVMIENIFSYFSHDEIAKNRLVCRTFNEICSRMLN---RG 258
           + + L ++  K+E +L++P  V +       + D+ +K R++CR F  IC  +L+   +G
Sbjct: 745 ILKALVVHDGKLEVYLNVPSCVQLHRQHGSGNADDRSKIRMLCRRFQFICRALLHAVEQG 804

Query: 259 FLMIERRHAMALKTVKAQLP 318
            L I R    A K ++ +LP
Sbjct: 805 SLKIRRVDLAADKIIR-KLP 823


>02_05_0966 -
           33143383-33143464,33143946-33144087,33144136-33144163,
           33144453-33144631,33144776-33144866,33145643-33145951
          Length = 276

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -2

Query: 576 EVLNSHARYIPELL*YFVSTRRRRGRVQYGQNAFYFIYNLSRY 448
           E LNSH  ++P L   F S ++R+ ++Q   +    IYN++ +
Sbjct: 203 EKLNSHLPFLPALSKTF-SAKKRKSKLQKAWDGTKVIYNIASW 244


>10_08_1023 -
           22341815-22342042,22342179-22342247,22342717-22342840,
           22343193-22343317,22343815-22344276,22344357-22344700,
           22345061-22345406,22345492-22345941,22346760-22347051,
           22347171-22347515,22347611-22347834,22348072-22348563,
           22348664-22349056,22349601-22349741,22349845-22350207,
           22350494-22352683,22353298-22353360,22353434-22353535,
           22353672-22354027,22354326-22354413,22354517-22354750,
           22355508-22355975
          Length = 2632

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -3

Query: 629 CAIPS*RFFLNAGDILSSKCSIAMLDISLSSCSTS*ARGGVADVSSMVKTRFISSITFPG 450
           CAIP        G  +   C +A + IS  +     A   +  ++++ K   +SS T PG
Sbjct: 440 CAIPVLPRLTMPGHRIDPPCGVARVHISHHTVDMEAASMHIKHLATVAKEAVVSSDTVPG 499

Query: 449 IK 444
            K
Sbjct: 500 AK 501


>03_05_0501 - 24944533-24945507
          Length = 324

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +1

Query: 466 DEIKRVLTILDTSATPPRAHEVLQELRDISSMAIEHFDDKISPAFRKNLQEGIAQVA 636
           DE++ +L  LD +A PPR     + L   + +   H   ++ P  R+  + G    A
Sbjct: 219 DELRALLVGLDDAAVPPRLFVDGRYLGGANEVVTLHEQARLRPVLRRAPRRGAGDAA 275


>01_06_0785 - 31985455-31988463
          Length = 1002

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +1

Query: 451 PGKVIDEIKRVLTILDTS-----ATPPRAHEVLQELRDISSMAIEHFDDKISPAFR 603
           P +++D + R L I D S     A   + HE+L  L D+     +H D   S A R
Sbjct: 667 PSRLLDTLSRTLPIRDCSWNERDAISLKNHEILVRLLDVCLSIFDHADGPRSLATR 722


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,189,517
Number of Sequences: 37544
Number of extensions: 372056
Number of successful extensions: 927
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)