Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27b23
(664 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 23 2.6
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 23 2.6
Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein RJP... 23 3.4
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 23 3.4
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 23 3.4
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 22 6.0
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 22 6.0
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 21 7.9
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 7.9
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 21 7.9
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 21 7.9
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 21 7.9
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 21 7.9
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 23.0 bits (47), Expect = 2.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 271 ERRHAMALKTVKAQLPRRESE 333
E H+M L+T+ LPR +SE
Sbjct: 616 ESVHSMELRTLPCLLPRPKSE 636
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 23.0 bits (47), Expect = 2.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 271 ERRHAMALKTVKAQLPRRESE 333
E H+M L+T+ LPR +SE
Sbjct: 584 ESVHSMELRTLPCLLPRPKSE 604
>Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein
RJP57-2 protein.
Length = 464
Score = 22.6 bits (46), Expect = 3.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 333 TQTSSFVSSLRYLDFDRDTDINAQ 404
T T + + +YLD+D D D Q
Sbjct: 33 TNTLNVIHKWKYLDYDFDNDERRQ 56
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 22.6 bits (46), Expect = 3.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 235 CSRMLNRGFLMIERRHAMALKTVKAQLPRRESERRH 342
CSR NR + +RR+ K L R S +R+
Sbjct: 237 CSRDRNREYKKKDRRYEKLHNEKKKLLEERTSRKRY 272
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 22.6 bits (46), Expect = 3.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 194 ISSCEKYENIFSIITKGR 141
+ S E +EN +IITKG+
Sbjct: 378 LKSLEDWENEMNIITKGK 395
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 21.8 bits (44), Expect = 6.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 100 ELLFLYRDKMEFLDLPLVMIENIFSYFSHDEIAKNRLV 213
E+L L D E + +P N + F HD +N+LV
Sbjct: 104 EVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLV 141
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 21.8 bits (44), Expect = 6.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 125 LSRYKNNNSVTTKPCTRIN 69
L+ ++NN +T P TRIN
Sbjct: 291 LTTIQHNNCLTRIPSTRIN 309
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 21.4 bits (43), Expect = 7.9
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 235 CSRMLNRGFLMIERRHAMALKTVKAQLPRRESERRHHPLSR 357
CSR NR + +RR+ L K +L + R+ + SR
Sbjct: 4 CSRDRNREYRKKDRRYE-KLHNEKEKLLEERTSRKRYSRSR 43
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 7.9
Identities = 6/8 (75%), Positives = 8/8 (100%)
Frame = -1
Query: 643 VWEPPALY 620
VW+PPA+Y
Sbjct: 142 VWQPPAVY 149
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 21.4 bits (43), Expect = 7.9
Identities = 6/8 (75%), Positives = 8/8 (100%)
Frame = -1
Query: 643 VWEPPALY 620
VW+PPA+Y
Sbjct: 134 VWKPPAIY 141
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 21.4 bits (43), Expect = 7.9
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 235 CSRMLNRGFLMIERRHAMALKTVKAQLPRRESERRHHPLSR 357
CSR NR + +RR+ L K +L + R+ + SR
Sbjct: 237 CSRDRNREYRKKDRRYE-KLHNEKEKLLEERTSRKRYSRSR 276
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 21.4 bits (43), Expect = 7.9
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 235 CSRMLNRGFLMIERRHAMALKTVKAQLPRRESERRHHPLSR 357
CSR NR + +RR+ L K +L + R+ + SR
Sbjct: 242 CSRDRNREYRKKDRRYE-KLHNEKEKLLEERTSRKRYSRSR 281
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.4 bits (43), Expect = 7.9
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 235 CSRMLNRGFLMIERRHAMALKTVKAQLPRRESERRHHPLSR 357
CSR NR + +RR+ L K +L + R+ + SR
Sbjct: 237 CSRDRNREYKEKDRRYE-KLHNEKEKLLEERTSRKRYSCSR 276
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,671
Number of Sequences: 438
Number of extensions: 4647
Number of successful extensions: 63
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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