Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27b22
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    36   0.005
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    29   0.62 
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    27   3.3  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.3  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    26   4.4  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   4.4  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    26   5.8  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   5.8  
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    26   5.8  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    25   7.7  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    25   7.7  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    25   7.7  

>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = +2

Query: 191 LIMLKVTLFVMYGATASLLPYLTIHMQSIGLTVPEISFVYLALPFTTFLSPPITGFLVD- 367
           LI L V+L  +    +  L Y T ++ S+GL     S +++A P T  L  PI G L D 
Sbjct: 36  LIALTVSLLGVQLTWSVELGYGTPYLFSLGLRKEWTSIIWIAGPLTGILIQPIAGILSDR 95

Query: 368 ---RFGEYKPVVITALIL 412
              R G  +P ++ A +L
Sbjct: 96  VNSRIGRRRPFMLCASLL 113


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +2

Query: 206 VTLFVMYGATASLLPYLTIHMQ-SIGLTVPEISFVYLALPFTTFLSPPITGFLVDRFGEY 382
           V +F  + +      +LT  +Q S GL++   S       F+   +  ++GFL+ RFG +
Sbjct: 357 VLIFTYFMSYYIFSNFLTSFLQVSYGLSIDMSSLTLNVFVFSMTTTAILSGFLMKRFGRF 416

Query: 383 KPVVITAL 406
           K +++ ++
Sbjct: 417 KMLLMISV 424


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -3

Query: 634 ERTLWRLKQLTVIYATVQYKINGFIFIRTLSARTRAPPDLYT--VRDRVSHYVCRWHNTR 461
           E  +W L   T+I   VQ++ N     +  S  T + P   T   R  V H+V R  N R
Sbjct: 590 ESDVWSLASSTLI-DFVQHR-NQHDMKKLASKMTTSLPVFSTSITRSDVLHFVTRLLNLR 647

Query: 460 RLLVRYQK 437
             LV YQK
Sbjct: 648 SRLVPYQK 655


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 86  EDKKTSEDNTNMDGYSDEE 142
           +DK T+ DN N  G SDEE
Sbjct: 259 QDKDTASDNDNNTGSSDEE 277


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 281 LTVPEISFVYLALPFTTFLSPPITGFLVDRFGEYKPVVITALI 409
           LTVP+++  YL +P     + PI  FL+  +  +   ++  L+
Sbjct: 345 LTVPDVAKNYLLVPMKLLFTEPIV-FLITLYSSFVYAILYLLL 386


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -2

Query: 395 SQQAYTPQTDPPKIQLSED*EMS*TVKLDKQKIFQEQSNLYSACESLNKVEEKQ*LRTSQ 216
           + +A TP   PP+I   E  +    +KL  Q+  QE++      E+  K EEK  L   +
Sbjct: 504 NSRAETPTAAPPQISEEEASQRKDAIKLAIQQRIQEKAE----AEAKRKAEEKARLEAEE 559


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 59  SASDMAKSIEDKKTSEDNTNMDGYSDEELGRI 154
           SAS  ++ +E  ++S D+ N+DG S  E  ++
Sbjct: 34  SASHKSEHVEVSQSSSDSKNVDGRSTSEKRKV 65


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +2

Query: 152 IGRFMVWMRINPNLIMLKVT---LFVMYGATASLLPYLTI 262
           +G F V M     LI L  T   +F++Y ATA  LP L +
Sbjct: 345 VGGFSVHMMKTTMLIGLTATTLIIFILYFATAQTLPCLAL 384


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 446 PHQETPGVMPSAYVMRHPITNSVEIWWSPCPSRE 547
           P ++ P ++PS    + P+ NS+++   P P  +
Sbjct: 53  PQEQQPNIIPSKEEDKKPVINSMKLPSIPAPGTD 86


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 41  LENVNVSASDMAKSIEDKKTS-EDNTNMDGYSDEE 142
           LEN     S+MA SIE  KTS E   + D   DEE
Sbjct: 541 LENGQTLKSNMASSIEKSKTSTEVVASYDTTLDEE 575


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 95  KTSEDNTNMDGYSDEELGRIGRFMVWMRINPNLIMLK 205
           +T ED+   D   D +LG+IG   VW+   P  +M K
Sbjct: 9   RTEEDDRYEDDAGDLDLGQIGS-RVWLVKIPKFLMDK 44


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 527 SPCPSRECPDEDETVDFVLDRCVDHCQLFKPPESPFTKPS 646
           SP  SR   DEDE   +  D   +    F    S ++KPS
Sbjct: 318 SPRRSRSYSDEDEESVYSSDVSTESSSQFSSRSSEYSKPS 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,818
Number of Sequences: 5004
Number of extensions: 57532
Number of successful extensions: 161
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)