Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27b22
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0024 - 40559423-40559863,40559959-40560192,40560546-405608... 32 0.37
03_01_0475 + 3656628-3656791,3656944-3657013,3657114-3657310,365... 32 0.48
02_05_1302 + 35567585-35567848,35568303-35568368,35568475-355685... 32 0.48
05_07_0162 + 28090579-28091343 31 0.84
07_03_1019 + 23337543-23337697,23338315-23338384,23338555-233387... 29 2.6
09_04_0278 + 16333261-16334172,16334900-16335532 29 4.5
10_08_1057 + 22594419-22594466,22594710-22594776,22595053-225952... 28 6.0
11_04_0331 + 16456577-16456579,16456664-16456911,16457625-164578... 28 7.9
08_01_0322 - 2898272-2898475,2898548-2898730,2898817-2899702,290... 28 7.9
07_03_1080 + 23815232-23817040 28 7.9
>01_07_0024 -
40559423-40559863,40559959-40560192,40560546-40560842,
40561048-40561230,40561534-40561590,40561851-40561937
Length = 432
Score = 32.3 bits (70), Expect = 0.37
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Frame = +2
Query: 371 FGEYKPVVITALILNAAFHHSLLLIPHQETPGVMPSAYVMRHP--ITNSVEIWWSPCPSR 544
+G PV+I+A++ A + SLLL+ PG++P P + + E+ + P
Sbjct: 93 YGLGLPVMISAVVFTA-YDLSLLLLTSGRDPGIIPRNAHPPEPEGLDGNAEVGSNQTPPM 151
Query: 545 ECPD-EDETVD--FVLDRCVDHCQLFKPP 622
P +D V+ V + D C L++PP
Sbjct: 152 RLPRVKDVVVNGITVKTKYCDTCMLYRPP 180
>03_01_0475 +
3656628-3656791,3656944-3657013,3657114-3657310,
3657409-3657484,3657794-3657877,3658247-3658326,
3658422-3658548,3658727-3658786,3658874-3658924,
3659013-3659171,3659296-3659428,3659545-3659717
Length = 457
Score = 31.9 bits (69), Expect = 0.48
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 233 TASLLPYLTIHMQSIGLTVPEISFVYLALPFTTFLSPPITGFLVDRFGEYK 385
+A YL + +Q IGL + + V L+ L + G ++DRFG +K
Sbjct: 36 SACWFTYLLLFLQEIGLAPRDAAIVMLSGQVADGLMTILAGEMIDRFGHFK 86
>02_05_1302 +
35567585-35567848,35568303-35568368,35568475-35568573,
35569028-35569061,35569147-35569246,35569738-35569813,
35569974-35570315,35570426-35570569,35570840-35571073,
35571149-35571212,35571297-35571340,35571431-35571601
Length = 545
Score = 31.9 bits (69), Expect = 0.48
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +2
Query: 245 LPYLTIHMQSIGLTVPEISFVYLALPFTTFLSPPITGFLVD----RFGEYKPVVITALIL 412
L LT ++Q++G+ SF++L P T F+ P G D ++G +P ++ ++
Sbjct: 80 LSLLTPYIQTLGIDHAMASFIWLCGPITGFVVQPCVGVWSDKCRSKYGRRRPFILAGCLM 139
>05_07_0162 + 28090579-28091343
Length = 254
Score = 31.1 bits (67), Expect = 0.84
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 527 SPCPSRECPDEDETVDFVLDRCVDHCQLFKPPESPFTKPSGDDEND-DLD 673
+P P R+ P++ + VDH PP P T+P+ DD+ D DLD
Sbjct: 77 TPPPHRQAPEKASRLPLWRFLMVDHGP--PPPPPPTTQPAADDDLDLDLD 124
>07_03_1019 +
23337543-23337697,23338315-23338384,23338555-23338740,
23339006-23339080,23339161-23339240,23339357-23339483,
23340608-23340667,23341926-23341976,23342048-23342206,
23342528-23342660,23343097-23343166,23343516-23343570
Length = 406
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 251 YLTIHMQSIGLTVPEISFVYLALPFTTFLSPPITGFLVDRFGEYK 385
YL + + IGL+ + + V L+ + G L+DRFG +K
Sbjct: 39 YLLVFLTDIGLSPSDAAVVMLSGQLADGFATIFVGELIDRFGHFK 83
>09_04_0278 + 16333261-16334172,16334900-16335532
Length = 514
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 121 GRVQRRGTRPHREVHGLDAHQSELNYVKSDSF 216
G + GT PHR +H L L Y++ SF
Sbjct: 46 GNLNLVGTLPHRSIHNLSKKYGPLMYLRFGSF 77
>10_08_1057 +
22594419-22594466,22594710-22594776,22595053-22595270,
22595425-22595981,22596398-22597217
Length = 569
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 326 TTFLSPPITGFLVDRF-GEYKPVVITAL 406
TTFL+P + FL D + G+YK + I+ +
Sbjct: 80 TTFLTPVLGAFLADTYWGKYKTIAISTV 107
>11_04_0331 +
16456577-16456579,16456664-16456911,16457625-16457812,
16458293-16458489,16458579-16458768,16458865-16459084,
16459169-16459376,16459508-16459642,16459725-16459916,
16459999-16460171,16460266-16460454,16460539-16460655,
16460734-16460818,16460900-16461052,16461135-16461260,
16461391-16461573,16461823-16461984,16462098-16462214
Length = 961
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = +2
Query: 536 PSRECP----DEDETVDFVLDRCVDHCQLFKPPESPFTKPSGDDEND 664
P R+ P D+D D R H F+PP P T P DD+ D
Sbjct: 135 PDRKLPRMLHDQDTDEDMSFRRPKRHRANFRPPREPRT-PRSDDDGD 180
>08_01_0322 -
2898272-2898475,2898548-2898730,2898817-2899702,
2902070-2902374
Length = 525
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +2
Query: 464 GVMPSAYVMRHPITNSVE--IWWSPCPSREC 550
GV S R I NSV+ +WWS CP C
Sbjct: 8 GVHLSVIHARVLIQNSVKASVWWSHCPPHRC 38
>07_03_1080 + 23815232-23817040
Length = 602
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -3
Query: 634 ERTLWRLKQLTVIYATVQYKINGFIFIRTLSAR-TRAPPDLYTVRDRVSHYVCRWHNTRR 458
++ +W L +L Y V+ K+ + F++ L AR T + P S + +TRR
Sbjct: 212 QQLMWMLNELASPYGDVEQKLASY-FLQGLFARLTASGPRTLRTLAAASDRNTSFDSTRR 270
Query: 457 LLVRYQK 437
+R+Q+
Sbjct: 271 TALRFQE 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,701,784
Number of Sequences: 37544
Number of extensions: 383244
Number of successful extensions: 1041
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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