Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27b20
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   0.92 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   0.92 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.6  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = +2

Query: 347 FGIYNIIMLTSCCLIILAMYMDIFGFSVVMPA-----VACDMDLTTAEQGLLSAIPLIGV 511
           F  Y I +   CC++++  ++  +     +PA     V   + + T   G+ +++P +  
Sbjct: 241 FSYYLIQIYIPCCMLVIVSWVSFWLDQSAVPARVSLGVTTLLTMATQTSGINASLPPVSY 300

Query: 512 MFSSYVW-GFC 541
             +  +W G C
Sbjct: 301 TKAIDIWTGVC 311


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = +2

Query: 347 FGIYNIIMLTSCCLIILAMYMDIFGFSVVMPA-----VACDMDLTTAEQGLLSAIPLIGV 511
           F  Y I +   CC++++  ++  +     +PA     V   + + T   G+ +++P +  
Sbjct: 241 FSYYLIQIYIPCCMLVIVSWVSFWLDQSAVPARVSLGVTTLLTMATQTSGINASLPPVSY 300

Query: 512 MFSSYVW-GFC 541
             +  +W G C
Sbjct: 301 TKAIDIWTGVC 311


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 204 QNY*EAKKSIDFYKDLIVSRKFEIW 278
           +NY + + ++D YKD  V +KF  W
Sbjct: 61  RNY-DMESNMDMYKDKNVVQKFLWW 84


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 204 QNY*EAKKSIDFYKDLIVSRKFEIW 278
           +NY + + ++D YKD  V +KF  W
Sbjct: 61  RNY-DMESNMDMYKDKNVVQKFLWW 84


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 559 TTPCISAEAPHI 524
           TTP +S E PH+
Sbjct: 360 TTPTVSVEQPHL 371


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 399 QCTWTYSVSPW*CRPLPVIWTLRPQNKVYSL 491
           QC   +S+S +  +P+P      P+N   S+
Sbjct: 144 QCCGVHSLSDYNDKPIPASCCNSPENNTCSI 174


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 462 LRPQNKVYSLLYR 500
           L  Q KVY+LLYR
Sbjct: 34  LLKQKKVYNLLYR 46


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 462 LRPQNKVYSLLYR 500
           L  Q KVY+LLYR
Sbjct: 34  LLKQKKVYNLLYR 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,627
Number of Sequences: 438
Number of extensions: 4155
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)