Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27b19
         (167 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   1.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   1.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   2.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    19   4.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    18   9.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          18   9.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    18   9.7  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 74  RERVMFSITSWRGGYHG 24
           RE + F  T W   Y+G
Sbjct: 424 REAITFQYTDWEEVYNG 440


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 74  RERVMFSITSWRGGYHG 24
           RE + F  T W   Y+G
Sbjct: 424 REAITFQYTDWEEVYNG 440


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -2

Query: 163 FFTSHRQIY*KFKCILIPNKTEKVR 89
           F+  H+QI  ++ C  + N+  +V+
Sbjct: 234 FYYMHQQIMARYNCERLCNRLGRVK 258


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
          acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 23 CHGSPHAMR 49
          CHG+P A R
Sbjct: 15 CHGNPDAKR 23


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 54  AKHHPFSTSLQDRTFSVLFGIKMH 125
           A +H FS+    R  +V +  +MH
Sbjct: 88  ALNHKFSSVTLYRNKTVKYSARMH 111


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -2

Query: 112 PNKTEKVRSWSD 77
           P K    +SWSD
Sbjct: 456 PKKDGPTKSWSD 467


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 43  GVGATMAAAV 14
           G+G  MAAAV
Sbjct: 110 GIGLAMAAAV 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,764
Number of Sequences: 438
Number of extensions: 588
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 35
effective length of database: 131,013
effective search space used:  2620260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)