Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27b17
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 129 3e-31
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 30 0.22
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 27 2.0
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 27 2.7
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual 26 4.7
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 25 6.2
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 25 8.2
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ... 25 8.2
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 8.2
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch... 25 8.2
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 129 bits (311), Expect = 3e-31
Identities = 56/127 (44%), Positives = 86/127 (67%)
Frame = +3
Query: 207 NYPKKLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLFAYILYVMSGLGITAGAHRLWA 386
N+ + L W + +L L + A+YG +F + +T +FA I Y SGLGITAG HRLW+
Sbjct: 57 NWWRHLNWLHCMLIFGLPMIAIYG--VFTTPLQTKTLIFAIIYYAYSGLGITAGYHRLWS 114
Query: 387 HKSYKAKWPLRVILIIFNSLAFQDSALDWARDHRMHHKYSETDADPHNATRGFFFSHIGW 566
H++YKAK PL L + AF+ S W+RDHR HH+Y++TD DP+N +GF+++H+GW
Sbjct: 115 HRAYKAKKPLEYFLAAGGAAAFEGSIRWWSRDHRAHHRYTDTDKDPYNVKKGFWYAHVGW 174
Query: 567 LLVRKHP 587
+++ ++P
Sbjct: 175 MIILQNP 181
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 30.3 bits (65), Expect = 0.22
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +3
Query: 252 YLHIAALYGGYLFLFHAKWQTDLFAYILYVMSGLGITAGAHRLWAHKSYKAKWPLRVILI 431
Y+ +A L ++ LF T L IL +++ LGI A + +AH WP R++L
Sbjct: 514 YILLACLILFFMTLFSRSSSTILPPSILLILTFLGIVASLYYCFAHGLQFINWP-RLLLP 572
Query: 432 IF 437
F
Sbjct: 573 SF 574
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 210 YPKKLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLFAYILYVM 344
Y KKL W I+ F Y H + Y+ L H ++F+ Y++
Sbjct: 440 YTKKL-WSLIVNFEYTHAPLIPDAYMKLLHLYEFPNIFSKYDYIL 483
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 161 YSRLRTVQHTCTASRQLPKETSLEEYNTFYIPSYCCVVWRLPF 289
YSRL H C SR++ ET+ ++ N C+ + L +
Sbjct: 329 YSRLLLFAHQCIPSREITFETTSKDGNLLNAIRIFCLYFDLDY 371
>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Frame = +3
Query: 183 STPVQQADNYPKK--LVWRNIIL---FTYLHIAALYGGYLFLFHAKWQTDLF 323
S+P Q ++ K +VW ++++ F+Y+ AA Y + L+ W+ L+
Sbjct: 64 SSPPPQTQSFLKTVLIVWFSLLVTSYFSYMPFAASYFSFTMLYIWSWKHPLY 115
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Frame = +3
Query: 270 LYGGYLFLFHAKWQTDL------FAYILYVMSGLGITAGAHRLWAHKSYKAKW 410
L+GG + LF ++TDL + + +Y I H+ W KW
Sbjct: 22 LFGGPMMLFFINYKTDLLKVDDVYNHEIYSNQSAAIPKIIHQTWKTNEIPEKW 74
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 25.0 bits (52), Expect = 8.2
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Frame = +3
Query: 441 SLAFQDSALDW-----ARDHRMHHKYSETDADPHNATR 539
SLAF DS DW +R + K TD P++ TR
Sbjct: 437 SLAFNDSKSDWCCLASSRSTSISRKNRYTDIVPYDKTR 474
>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 278
Score = 25.0 bits (52), Expect = 8.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 552 RKRNLVWHYVGRHQSRSIYDACDDHVPNLKQNPEKPR 442
+K+N+ H VGR +S +A H P P+ P+
Sbjct: 80 KKKNIHGHRVGRVESDKTKEAERQHKPRKPFIPKNPK 116
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = +1
Query: 331 YCM*CQDLASQQVHIDYGHINHTKQSGLYVLSLSSSIPWL 450
+C+ C D+ H H+ H K+ +Y L WL
Sbjct: 1365 FCLSCVDMLKNLEHELIKHLKHMKKESVYSKKLEEEY-WL 1403
>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 505
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -3
Query: 180 TVLSLEYQHHFQREHHLHPLHWAPYWSVISRYTSSYLLTV*KKYTI 43
+++S+ F R HHL+ LHW S + Y + ++L + Y++
Sbjct: 336 SIISIIQTFIFDR-HHLYTLHWT---SEMGGYLAGFILVMFLLYSL 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,775
Number of Sequences: 5004
Number of extensions: 60673
Number of successful extensions: 149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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