Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27b16
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0686 + 19457832-19457870,19458021-19458107,19459311-194593... 187 7e-48
08_02_1399 + 26771106-26771171,26772004-26772111,26772218-267722... 185 2e-47
03_05_0477 + 24707460-24707553,24707644-24707711,24707857-247079... 105 4e-23
12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812 103 8e-23
07_01_0503 - 3751028-3751063,3751145-3751231,3751333-3751410,375... 46 2e-05
09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645 28 5.0
04_04_0650 + 26950912-26951397,26951552-26951728 28 6.6
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254 27 8.7
02_04_0551 + 23801464-23801802 27 8.7
>09_04_0686 +
19457832-19457870,19458021-19458107,19459311-19459391,
19459463-19459489,19459589-19459651,19459768-19459854,
19460290-19460415,19460827-19460960,19461037-19461109,
19461307-19461372,19461778-19461816,19461927-19462051,
19462131-19462245,19463109-19463141,19463525-19463593
Length = 387
Score = 187 bits (455), Expect = 7e-48
Identities = 94/167 (56%), Positives = 115/167 (68%), Gaps = 5/167 (2%)
Frame = +2
Query: 113 LKSSPAVLGMLTRLSRRSFATSKAL-----ASKPVTVRDALNQAIDEEMERDEKVFVLGE 277
L S P + +L RL + A + A A+K +TVR+ALN A+DEEM D VF++GE
Sbjct: 9 LGSGPMLGQVLRRLRPATAAAADAARAYSAAAKEMTVREALNSALDEEMSADPSVFLMGE 68
Query: 278 EVAXYDGAYXVTRGLWKKYGDKRVIDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQ 457
EV Y GAY +++GL KYG +RV+DTPITE L+P+ EFMTFNFSMQ
Sbjct: 69 EVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIAVGAAYQGLRPVVEFMTFNFSMQ 128
Query: 458 AIDHIINSAAKTFYMSAGTVPVPIVFRGPNGAASXVAAQHSQCFGAW 598
AIDHIINSAAK+ YMSAG + VPIVFRGPNGAA+ V AQHSQC+ AW
Sbjct: 129 AIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAW 175
>08_02_1399 +
26771106-26771171,26772004-26772111,26772218-26772280,
26772382-26772468,26772931-26773056,26773418-26773551,
26773627-26773699,26773819-26773884,26774358-26774391,
26774904-26774953,26775067-26775191,26775278-26775392,
26775617-26775685
Length = 371
Score = 185 bits (451), Expect = 2e-47
Identities = 87/143 (60%), Positives = 105/143 (73%)
Frame = +2
Query: 170 ATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAXYDGAYXVTRGLWKKYGDKRV 349
A + + A+K +TVR+ALN A+DEEM D VF++GEEV Y GAY +++GL KYG RV
Sbjct: 13 ARTYSAAAKEMTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRV 72
Query: 350 IDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYMSAGTVPVPI 529
+DTPITE L+P+ EFMTFNFSMQAIDHIINSAAK+ YMSAG + VPI
Sbjct: 73 LDTPITEAGFTGIGVGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPI 132
Query: 530 VFRGPNGAASXVAAQHSQCFGAW 598
VFRGPNGAA+ V AQHSQC+ AW
Sbjct: 133 VFRGPNGAAAGVGAQHSQCYAAW 155
>03_05_0477 +
24707460-24707553,24707644-24707711,24707857-24707903,
24709188-24710160
Length = 393
Score = 105 bits (251), Expect = 4e-23
Identities = 54/149 (36%), Positives = 77/149 (51%)
Frame = +2
Query: 137 GMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAXYDGAYXVTR 316
G +++ + A S V + +AL +A+ EEM+ D V V GE+V Y G+Y VT+
Sbjct: 52 GRMSKAESPASAASSKSDGHEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTK 111
Query: 317 GLWKKYGDKRVIDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTF 496
GL + +GD RV+DTPI E L+P+ E M F + A + I N+
Sbjct: 112 GLAEMFGDLRVLDTPIAENSFTGMGVGAAMKGLRPVVEGMNMGFLLLAYNQISNNCGMLH 171
Query: 497 YMSAGTVPVPIVFRGPNGAASXVAAQHSQ 583
Y S G +PIV RGP G + A+HSQ
Sbjct: 172 YTSGGQFKIPIVIRGPGGVGRQLGAEHSQ 200
>12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812
Length = 376
Score = 103 bits (248), Expect = 8e-23
Identities = 57/147 (38%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
Frame = +2
Query: 155 SRRSFATSKALASKP----VTVRDALNQAIDEEMERDEKVFVLGEEVAXYDGAYXVTRGL 322
+RRS + SK V + +AL +A+ EEM+ D V V GE+V Y G+Y VT+GL
Sbjct: 37 ARRSASADATAESKSGGHEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGL 96
Query: 323 WKKYGDKRVIDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYM 502
+ +GD RV+DTPI E L+PI E M F + A + I N+ Y
Sbjct: 97 AEMFGDLRVLDTPIAENSFAGMGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYT 156
Query: 503 SAGTVPVPIVFRGPNGAASXVAAQHSQ 583
S G +PIV RGP G + A+HSQ
Sbjct: 157 SGGQFKIPIVIRGPGGVGRQLGAEHSQ 183
>07_01_0503 -
3751028-3751063,3751145-3751231,3751333-3751410,
3751488-3751583,3752124-3752210,3752289-3752357,
3752511-3752600,3752601-3752720,3752907-3753004,
3753084-3753193,3753463-3753533,3753679-3753714,
3753862-3753973,3754495-3754700
Length = 431
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +2
Query: 188 ASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAXYDGAYXVTRGLWKKYGDKRVIDTPIT 367
A K V + A+NQA+ ++ D + +V GE+V + G + T GL ++G RV +TP+
Sbjct: 46 AGKEVNLFTAINQALHIALDTDPRSYVFGEDVG-FGGVFRCTTGLADRFGRNRVFNTPLC 104
Query: 368 E 370
E
Sbjct: 105 E 105
>09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645
Length = 375
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 107 MALKSSPAVLGMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEK 259
M + PA+ L ++RRS K+LA K + R+ N + D+K
Sbjct: 177 MPHRKDPALPNTLNDINRRSQEIGKSLARKKLATREQKNPTSPDITNNDQK 227
>04_04_0650 + 26950912-26951397,26951552-26951728
Length = 220
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 122 SPAVLGMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEME 247
SPA L + RL R ++ +++ PV +D Q +EE E
Sbjct: 10 SPAKLSLERRLPRATWTARRSVRFPPVRAQDQQQQVKEEEEE 51
>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
Length = 425
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 453 IEKLKVMNSQIGLSPAKAAPTAIPANPASV 364
++K+KV+N LSP A P +P PASV
Sbjct: 390 LQKMKVLNVLNKLSPTDALP--LPTQPASV 417
>02_04_0551 + 23801464-23801802
Length = 112
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 539 GPNGAASXVAAQHSQCFGAW 598
G AA+ VA QH+ C GAW
Sbjct: 11 GGGAAAAAVARQHAVCDGAW 30
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,240,299
Number of Sequences: 37544
Number of extensions: 282167
Number of successful extensions: 851
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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