Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27b16
(599 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038606-5|AAB92024.2| 352|Caenorhabditis elegans Hypothetical ... 212 2e-55
Z79695-1|CAB01970.1| 366|Caenorhabditis elegans Hypothetical pr... 55 4e-08
Z75541-1|CAA99853.3| 1119|Caenorhabditis elegans Hypothetical pr... 30 1.5
DQ178237-1|ABA18179.1| 1161|Caenorhabditis elegans sodium depend... 30 1.5
AY887903-1|AAX34415.1| 1119|Caenorhabditis elegans anion transpo... 30 1.5
AF004926-1|AAC16758.1| 1119|Caenorhabditis elegans HCO3 transpor... 30 1.5
Z81027-2|CAB02687.1| 282|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z29560-12|CAL22705.1| 395|Caenorhabditis elegans Hypothetical p... 28 4.4
U58758-12|AAB93432.1| 392|Caenorhabditis elegans Hypothetical p... 27 7.7
>AF038606-5|AAB92024.2| 352|Caenorhabditis elegans Hypothetical
protein C04C3.3 protein.
Length = 352
Score = 212 bits (517), Expect = 2e-55
Identities = 98/143 (68%), Positives = 116/143 (81%)
Frame = +2
Query: 170 ATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAXYDGAYXVTRGLWKKYGDKRV 349
A + A+ +TVRDALNQA+DEE++RD++VF++GEEVA YDGAY +++GLWKK+GDKRV
Sbjct: 15 AGTSTRAASTMTVRDALNQAMDEEIKRDDRVFLMGEEVAQYDGAYKISKGLWKKHGDKRV 74
Query: 350 IDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYMSAGTVPVPI 529
+DTPITE L+PICEFMTFNFSMQAID IINSAAKT+YMSAG VPVPI
Sbjct: 75 VDTPITEMGFAGIAVGAAFAGLRPICEFMTFNFSMQAIDQIINSAAKTYYMSAGRVPVPI 134
Query: 530 VFRGPNGAASXVAAQHSQCFGAW 598
VFRGPNGAA+ VAAQHSQ F AW
Sbjct: 135 VFRGPNGAAAGVAAQHSQDFSAW 157
>Z79695-1|CAB01970.1| 366|Caenorhabditis elegans Hypothetical
protein F27D4.5 protein.
Length = 366
Score = 54.8 bits (126), Expect = 4e-08
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 1/134 (0%)
Frame = +2
Query: 185 LASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAXYDGAYXVTRGLWKKYGDKRVIDTPI 364
L + + ++N+A+ ME D+ + GE+VA + G + + L KK+G RV +TP+
Sbjct: 40 LEKTKMNLMQSVNEAMRIAMETDDSAVLFGEDVA-FGGVFRCSLDLQKKFGKDRVFNTPL 98
Query: 365 TEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYMSAGTVPV-PIVFRG 541
E I E ++ A D ++N AAK Y S + R
Sbjct: 99 CEQGIAGFGIGVAAAGATAIAEIQFGDYIFPAYDQLVNEAAKFRYRSGNQFDCGKLTVRT 158
Query: 542 PNGAASXVAAQHSQ 583
GA A HSQ
Sbjct: 159 TWGAVGHGALYHSQ 172
>Z75541-1|CAA99853.3| 1119|Caenorhabditis elegans Hypothetical
protein F52B5.1 protein.
Length = 1119
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 62 FRCCKNYLTADIIFKMALKSSPAVLGMLTRLSRRSFAT 175
FR + TA IIF M + + A++ +TR + SFAT
Sbjct: 512 FRFWVHVWTAVIIFLMVVTDASALVSFITRFTEESFAT 549
>DQ178237-1|ABA18179.1| 1161|Caenorhabditis elegans sodium dependent
chloride bicarbonateanion exchanger alternative variant
a protein.
Length = 1161
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 62 FRCCKNYLTADIIFKMALKSSPAVLGMLTRLSRRSFAT 175
FR + TA IIF M + + A++ +TR + SFAT
Sbjct: 554 FRFWVHVWTAVIIFLMVVTDASALVSFITRFTEESFAT 591
>AY887903-1|AAX34415.1| 1119|Caenorhabditis elegans anion
transporter ABTS-1 protein.
Length = 1119
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 62 FRCCKNYLTADIIFKMALKSSPAVLGMLTRLSRRSFAT 175
FR + TA IIF M + + A++ +TR + SFAT
Sbjct: 512 FRFWVHVWTAVIIFLMVVTDASALVSFITRFTEESFAT 549
>AF004926-1|AAC16758.1| 1119|Caenorhabditis elegans HCO3 transporter
protein.
Length = 1119
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 62 FRCCKNYLTADIIFKMALKSSPAVLGMLTRLSRRSFAT 175
FR + TA IIF M + + A++ +TR + SFAT
Sbjct: 512 FRFWVHVWTAVIIFLMVVTDASALVSFITRFTEESFAT 549
>Z81027-2|CAB02687.1| 282|Caenorhabditis elegans Hypothetical
protein AH10.3 protein.
Length = 282
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 116 KSSPAVLGMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEKV 262
K S +++ L L R+ ATS ++P T D L++ EEM+R E +
Sbjct: 22 KRSSSLIASL--LGSRNGATSSKTINEPTTTEDELDEESMEEMKRRELI 68
>Z29560-12|CAL22705.1| 395|Caenorhabditis elegans Hypothetical
protein K03H1.13 protein.
Length = 395
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +2
Query: 206 VRDALNQAIDEEMERDEKVFVLGEEVAXYDGAYXVTRGLWKKYGDKRVIDTPITE 370
++ L + EEM +D + + +E+ D Y +T KK+ + ++ +PITE
Sbjct: 177 LKRVLQKPTIEEMRKDGAI--MEDEMVLTDSCYFMTWKFCKKFMENPLLRSPITE 229
>U58758-12|AAB93432.1| 392|Caenorhabditis elegans Hypothetical
protein ZK1127.10 protein.
Length = 392
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 408 AKAAPTAIPANPASVMGVSITLLSPYFFHRPL 313
A TA ANP V+ V T +SPY F RP+
Sbjct: 160 AAVVQTAKKANPEIVVVVDNTFMSPY-FQRPI 190
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,724,880
Number of Sequences: 27780
Number of extensions: 234373
Number of successful extensions: 644
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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