Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27b13
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch... 104 1e-23
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 104 2e-23
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 31 0.14
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 30 0.43
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 29 1.00
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c... 27 4.0
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 27 4.0
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.3
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 26 5.3
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 26 7.0
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 26 7.0
>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 104 bits (250), Expect = 1e-23
Identities = 68/192 (35%), Positives = 96/192 (50%), Gaps = 5/192 (2%)
Frame = +1
Query: 226 GSQHVRYQ--RAAVAANGHECATVGREILEKNGSAVDAAIATLFCEGISCAQCMGLGGGF 399
GSQ V + VA C+ +G IL+ G+AVDAAIA+ C G + G+GGG
Sbjct: 89 GSQRVVVEGKNGVVATEEETCSQIGVGILKAGGNAVDAAIASGICIGAVNSFSSGIGGGG 148
Query: 400 LATVYDASTGRVRVLNARERAPAAMTLNMYENAS--STVGGLAIAVPGELRGYGALYQEY 573
+ + G LN RE APA + NM+ S S VGGL++AVPGE+ GY ++ Y
Sbjct: 149 FMLIRHPN-GTAHSLNFRETAPAGASKNMFHGNSTLSQVGGLSVAVPGEIAGYERAWKMY 207
Query: 574 GRLPWRELVQPTAELCRRGHRV-TEYMGRVLQTFSDRIMAEPSMXELYVNKATGKVWNVG 750
G LPW +L +PT L R G + E R+ + P +++ + G +VG
Sbjct: 208 GSLPWHKLFEPTIRLMRDGMPMPKELASRIRRPEFSYFKTHPDWSKIFAPE--GVFLHVG 265
Query: 751 DYITDPTFAKTL 786
+ P A TL
Sbjct: 266 EKFYRPALASTL 277
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 104 bits (249), Expect = 2e-23
Identities = 69/193 (35%), Positives = 106/193 (54%), Gaps = 4/193 (2%)
Frame = +1
Query: 220 WTGSQHVRYQRAAVAANGHECATVGREILEKNGSAVDAAIATLFCEGISCAQCMGLGGG- 396
+TG + VR +R AVA+ C+ +G +L G+AVDAAIA+ FC G+ G+GGG
Sbjct: 72 FTGHK-VRGRRGAVASEVPVCSDIGVSMLADGGNAVDAAIASTFCIGVVNFFSSGIGGGG 130
Query: 397 FLATVYDASTGRVRVLNARERAPAAMTLNMYENAS--STVGGLAIAVPGELRGYGALYQE 570
F+ + T + L RE AP ++ +M++ + VG L+IA+PGEL G ++
Sbjct: 131 FMLIKHPNETAQS--LTFREIAPGNVSKHMFDKNPMLAQVGPLSIAIPGELAGLYEAWKS 188
Query: 571 YGRLPWRELVQPTAELCRRGHRVTEYMGRVLQ-TFSDRIMAEPSMXELYVNKATGKVWNV 747
+G L W +L++P +L R G VT M RVL+ ++ +P + + GKV
Sbjct: 189 HGLLDWSKLLEPNVKLAREGFPVTRAMERVLKLPEMAHLLKDPIWQPILM--PNGKVLRA 246
Query: 748 GDYITDPTFAKTL 786
GD + P +AKTL
Sbjct: 247 GDKMFRPAYAKTL 259
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 31.5 bits (68), Expect = 0.14
Identities = 36/176 (20%), Positives = 68/176 (38%), Gaps = 4/176 (2%)
Frame = -2
Query: 662 NTLPMYSVTRCPRRHNSAVGCTSSRHGKRPYSWYSAP*PRSSPGTAIASPPTVDDAFSYM 483
N S T +SA+ S H K S P ++ G + T D F +
Sbjct: 350 NPTSSISSTSSSSSTSSAISTISQDHTKTVTSVSDEPTTITASGATSVTTTTKTD-FDTV 408
Query: 482 FRVMAAGARSLALSTLTRPVLASYTVARNPPPSPMHCAQDIPSQNNVAIAASTAEPFFSS 303
+ + + ++ S T +++SY V+ P+ S + ++ TA SS
Sbjct: 409 TTTIVSTSTLISASDSTSIIVSSY-VSTVTQPASTRVQTTTVSSISTSVKQPTASVASSS 467
Query: 302 ISLPTVAHSCPLXXXXXXXXXXXCEPVHGCSTSTAISAPINTT----DNTLPSTQN 147
+S+P+ + P P STS+ + + +++T + +PST +
Sbjct: 468 VSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSS 523
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 29.9 bits (64), Expect = 0.43
Identities = 38/131 (29%), Positives = 54/131 (41%), Gaps = 7/131 (5%)
Frame = +1
Query: 220 WTGSQHVRYQRAAVAANGHECATVGREIL-------EKNGSAVDAAIATLFCEGISCAQC 378
W GS +V A + A G C +GR+I+ GSA+ A + I C
Sbjct: 135 WIGSAYVLASNAVLPAVGVFCNILGRKIVLYICIFFFMLGSALCGASQNMIWL-IVCRAI 193
Query: 379 MGLGGGFLATVYDASTGRVRVLNARERAPAAMTLNMYENASSTVGGLAIAVPGELRGYGA 558
GLGGG + ++ + + L R MY +T G A+ V G + G GA
Sbjct: 194 QGLGGGGIISLVNIIISDITPLRTRP---------MYSGILATAWGAAL-VAGPIIG-GA 242
Query: 559 LYQEYGRLPWR 591
+ Q R WR
Sbjct: 243 ICQ---RTTWR 250
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 28.7 bits (61), Expect = 1.00
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -2
Query: 611 AVGCTSSRHGKRPYSWYSAP*PRSSPGTAIASPP 510
A SS+H +RP SAP SSPGT A+ P
Sbjct: 502 AKSAQSSKHARRPSKQASAP---SSPGTTSAAVP 532
>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 408
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -2
Query: 536 PGTAIASPPTVDDAFSYMFRVMAAGARSLALSTLTRPV-LASYTVARNPPPSPMHCAQDI 360
PG P VD+A + ++ AG ++ A+ PV LA +++ +P +P A
Sbjct: 140 PGPLSILLPVVDEANPPVSPIVTAGQKTFAVRMPQHPVALALISISDSPLAAPSANASTR 199
Query: 359 PS 354
PS
Sbjct: 200 PS 201
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = -2
Query: 419 ASYTVARNPPPSPMHCAQDIPSQ----NNVAIAASTAEPFFSSI 300
+S+ + +PP SP+ C I ++ NN A + + ++ FS I
Sbjct: 111 SSFDASLSPPSSPLTCVSQIHTEQNFNNNDAFSLTNSQQAFSEI 154
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 26.2 bits (55), Expect = 5.3
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = -2
Query: 182 NTTDNTLPSTQNRRRLSQNHFQCRDGSSRQVNGNYCIGLRS*AF 51
NTT+N + S QN + + N+FQ + S++ N N L++ AF
Sbjct: 230 NTTNNRVSSFQNSQYSTLNNFQ--NNSNQSPNSNDLQPLQAEAF 271
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 450 GVEYPHPSRARVVHGR*EPAPESHALRARYPLT 352
G+EYP P + + HG+ + + A+ R +T
Sbjct: 77 GIEYPPPEKPKKAHGKGKSSKRPKAVDRRRSIT 109
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 277 ECATVGREILEKNGSAVDAAIATLFC 354
EC +GR IL ++G V A I C
Sbjct: 567 ECPALGRFILRRSGDTVAAGIVKELC 592
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 448 ARERAPAAMTLNMYENASSTVGGLAIAVPGELRGYGALYQEY 573
+R PA+ +L +E + S GL+ + E R +G + EY
Sbjct: 155 SRSSTPASPSLESHEFSESREAGLSQSNGFEARSHGTGFDEY 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,140,134
Number of Sequences: 5004
Number of extensions: 61099
Number of successful extensions: 201
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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