Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27b13
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   3.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   5.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.6  
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    22   7.4  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    22   7.4  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    22   7.4  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    22   7.4  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    22   7.4  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    22   7.4  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    22   7.4  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   7.4  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   7.4  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   7.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   7.4  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   7.4  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   7.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   7.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   7.4  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   9.8  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 424 CSRRTRSLGTRPRVPCIARKISPHRTTSLSQHRQPSHSFQVSPS 293
           C R+  SL  R  +   +R+ S   ++S+   R PS S   SPS
Sbjct: 6   CDRK--SLSQRKIIRSRSRRYSKRFSSSIVDRRSPSSSRSPSPS 47


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = -2

Query: 395 PPPSPMHCAQDIPSQNNVAIAASTAEPFFSSISLPT 288
           P P P+HC    P      I+     P F  I  PT
Sbjct: 345 PVPVPIHCGNFPPRPMGPWISIQEQVPRFRYIGPPT 380


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 747 HVPHFACRLVDIK 709
           H  H AC+  DIK
Sbjct: 364 HTAHIACKFADIK 376


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 472 MTLNMYE--NASSTVGGLAIAVPGELRGYGA 558
           M+ + Y+  + +S +G   ++ PG L GYG+
Sbjct: 136 MSTSSYDPYSPNSKIGRDELSQPGSLNGYGS 166


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 423 HGTGEGTQRQRTSSRRHDPEHVRER 497
           H   E   R+RTS RR+     RE+
Sbjct: 23  HNVEEKHLRERTSRRRYSRSREREQ 47


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 423 HGTGEGTQRQRTSSRRHDPEHVRER 497
           H   E   R+RTS RR+     RE+
Sbjct: 23  HNVEEKHLRERTSRRRYSRSREREQ 47


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 423 HGTGEGTQRQRTSSRRHDPEHVRER 497
           H   E   R+RTS RR+     RE+
Sbjct: 23  HNVEEKHLRERTSRRRYSRSREREQ 47


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 423 HGTGEGTQRQRTSSRRHDPEHVRER 497
           H   E   R+RTS RR+     RE+
Sbjct: 23  HNVEEKHLRERTSRRRYSRSREREQ 47


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 423 HGTGEGTQRQRTSSRRHDPEHVRER 497
           H   E   R+RTS RR+     RE+
Sbjct: 23  HNVEEKHLRERTSRRRYSRSREREQ 47


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 423 HGTGEGTQRQRTSSRRHDPEHVRER 497
           H   E   R+RTS RR+     RE+
Sbjct: 23  HNVEEKHLRERTSRRRYSRSREREQ 47


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 423 HGTGEGTQRQRTSSRRHDPEHVRER 497
           H   E   R+RTS RR+     RE+
Sbjct: 23  HNVEEKHLRERTSRRRYSRSREREQ 47


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 423 HGTGEGTQRQRTSSRRHDPEHVRER 497
           H   E   R+RTS RR+     RE+
Sbjct: 272 HNVEEKHLRERTSRRRYSRSREREQ 296


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 423 HGTGEGTQRQRTSSRRHDPEHVRER 497
           H   E   R+RTS RR+     RE+
Sbjct: 272 HNVEEKHLRERTSRRRYSRSREREQ 296


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 423 HGTGEGTQRQRTSSRRHDPEHVRER 497
           H   E   R+RTS RR+     RE+
Sbjct: 272 HNVEEKHLRERTSRRRYSRSREREQ 296


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 423 HGTGEGTQRQRTSSRRHDPEHVRER 497
           H   E   R+RTS RR+     RE+
Sbjct: 272 HNVEEKHLRERTSRRRYSRSREREQ 296


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 423 HGTGEGTQRQRTSSRRHDPEHVRER 497
           H   E   R+RTS RR+     RE+
Sbjct: 272 HNVEEKHLRERTSRRRYSRSREREQ 296


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 423 HGTGEGTQRQRTSSRRHDPEHVRER 497
           H   E   R+RTS RR+     RE+
Sbjct: 272 HNVEEKHLRERTSRRRYSRSREREQ 296


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 423 HGTGEGTQRQRTSSRRHDPEHVRER 497
           H   E   R+RTS RR+     RE+
Sbjct: 271 HNVEEKHLRERTSRRRYSRSREREQ 295


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 423 HGTGEGTQRQRTSSRRHDPEHVRER 497
           H   E   R+RTS RR+     RE+
Sbjct: 272 HNVEEKHLRERTSRRRYSRSREREQ 296


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = -2

Query: 395 PPPSPMHCAQDIPSQNNVAIAASTAEPFFSSISLPT 288
           P P P++C    P      I+     P F  I  PT
Sbjct: 120 PVPVPIYCGNFPPRPMGPWISVQEQVPRFRCIGPPT 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,196
Number of Sequences: 438
Number of extensions: 4951
Number of successful extensions: 30
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)