Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27b09
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 206 3e-54
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 203 2e-53
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 33 0.033
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 31 0.23
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 31 0.23
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 30 0.40
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 29 0.70
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 28 1.2
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 28 1.6
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 27 2.1
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 27 2.1
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 2.1
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|... 27 2.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.7
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 27 3.7
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 27 3.7
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 27 3.7
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 26 4.9
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 26 4.9
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 26 4.9
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.9
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ... 26 6.5
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 22 8.2
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 8.6
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 8.6
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 25 8.6
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 206 bits (502), Expect = 3e-54
Identities = 111/245 (45%), Positives = 160/245 (65%), Gaps = 7/245 (2%)
Frame = +2
Query: 11 KNRMHVFKNAGK-DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEID-KNL 184
++R +K G DE+RRRR +E+RK KREE L KRRN+ EE I +
Sbjct: 10 EHRRQNYKGKGTFQADELRRRRETQQIEIRKQKREENLNKRRNLVDVQEPAEETIPLEQD 69
Query: 185 ATTDLD-EL----VMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQC 349
DL+ EL ++ A +++ EAQ+ A + RK LS + NPPI ++I AG++P V+
Sbjct: 70 KENDLELELQLPDLLKALYSDDIEAQIQATAKFRKALSKETNPPIQKVIDAGVVPRFVEF 129
Query: 350 LSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDQAVWALG 529
LS +N L+FE +WALTN+ASG+S QT+ VV A AVPVF+ LL S ++V +QAVWALG
Sbjct: 130 LSHENN-LLKFEASWALTNVASGSSNQTHVVVEANAVPVFVSLLSSSEQDVREQAVWALG 188
Query: 530 NIIGDGPVLRDFVIELGVVKPLLSLIKSDIPIPFLRNVTWVIVNLCRSKDPPPPLKTIQE 709
NI GD P+ RD V++ GV++PLL++I+S+ + LRN TW + N+CR K+P P +I +
Sbjct: 189 NIAGDSPMCRDHVLQCGVLEPLLNIIESNRRLSMLRNSTWTLSNMCRGKNPQPDWNSISQ 248
Query: 710 ILPGL 724
++P L
Sbjct: 249 VIPVL 253
Score = 62.1 bits (144), Expect = 8e-11
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Frame = +2
Query: 278 LSCDKNPPIDELIAAGILPILVQCLSRADNPALQFETAW--ALTNIASGTSAQTNKVVHA 451
LS N I +I AGI LV+ L +P+ Q +T ++ NI +G QT +++
Sbjct: 275 LSDGANEKIQAIIDAGIPRRLVELLM---HPSAQVQTPALRSVGNIVTGDDVQTQVIINC 331
Query: 452 GAVPVFLQLLMSPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLLSLIKSDIPIPF 631
GA+ L LL SP + V +A W + NI +VIE ++ PL+ L+ +
Sbjct: 332 GALSALLSLLSSPRDGVRKEACWTISNITAGNSSQIQYVIEANIIPPLIHLL-TTADFKI 390
Query: 632 LRNVTWVIVN 661
+ W I N
Sbjct: 391 QKEACWAISN 400
Score = 55.2 bits (127), Expect = 9e-09
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Frame = +2
Query: 290 KNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVF 469
KNP D + ++P+L + + D L + WA++ ++ G + + ++ AG
Sbjct: 237 KNPQPDWNSISQVIPVLSKLIYTLDEDVL-VDALWAISYLSDGANEKIQAIIDAGIPRRL 295
Query: 470 LQLLMSPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLLSLIKSDIPIPFLR-NVT 646
++LLM P V A+ ++GNI+ V +I G + LLSL+ S P +R
Sbjct: 296 VELLMHPSAQVQTPALRSVGNIVTGDDVQTQVIINCGALSALLSLLSS--PRDGVRKEAC 353
Query: 647 WVIVNL 664
W I N+
Sbjct: 354 WTISNI 359
Score = 41.9 bits (94), Expect = 9e-05
Identities = 25/116 (21%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Frame = +2
Query: 305 DELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLM 484
D ++ G+L L+ + ++ + W L+N+ G + Q + + +PV +L+
Sbjct: 199 DHVLQCGVLEPLLNIIESNRRLSMLRNSTWTLSNMCRGKNPQPDWNSISQVIPVLSKLIY 258
Query: 485 SPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLLSLI---KSDIPIPFLRNV 643
+ E+V A+WA+ + +I+ G+ + L+ L+ + + P LR+V
Sbjct: 259 TLDEDVLVDALWAISYLSDGANEKIQAIIDAGIPRRLVELLMHPSAQVQTPALRSV 314
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 203 bits (496), Expect = 2e-53
Identities = 114/245 (46%), Positives = 157/245 (64%), Gaps = 10/245 (4%)
Frame = +2
Query: 14 NRMHVFKNAGK-DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTD---EEEIDKN 181
+R FK+ G DE+RR+R E +E+RK KREE+L KRRN+ D EEE D++
Sbjct: 8 DRRSRFKSKGVFKADELRRQREEQQIEIRKQKREESLNKRRNLNAVLQNDIDVEEEADQS 67
Query: 182 LATTDL---DELVMNAAN--AENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQ 346
+ DE A+ +++ E QL AV + RK LS + +PPID++IA G++ VQ
Sbjct: 68 QVQMEQQMKDEFPKLTADVMSDDIELQLGAVTKFRKYLSKETHPPIDQVIACGVVDRFVQ 127
Query: 347 CLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDQAVWAL 526
L +++ LQFE AWALTNIASGT+ QT VV +GAVP F+QLL SP ++V +Q VWAL
Sbjct: 128 FLE-SEHHLLQFEAAWALTNIASGTTDQTRIVVDSGAVPRFIQLLSSPEKDVREQVVWAL 186
Query: 527 GNIIGDGPVLRDFVIELGVVKPLLSLIKSDI-PIPFLRNVTWVIVNLCRSKDPPPPLKTI 703
GNI GD RD+V+ GV++PLL++++S + LRN TW + NLCR K+PPP TI
Sbjct: 187 GNIAGDSSACRDYVLGNGVLQPLLNILQSSASDVSMLRNATWTLSNLCRGKNPPPNWSTI 246
Query: 704 QEILP 718
+P
Sbjct: 247 SVAVP 251
Score = 58.0 bits (134), Expect = 1e-09
Identities = 38/128 (29%), Positives = 59/128 (46%)
Frame = +2
Query: 278 LSCDKNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGA 457
LS N I ++ G P LV+ LS + + +Q ++ NI +GT AQT ++ GA
Sbjct: 275 LSDGPNEKIGAILDVGCAPRLVELLS-SPSVNIQTPALRSVGNIVTGTDAQTQIIIDCGA 333
Query: 458 VPVFLQLLMSPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLLSLIKSDIPIPFLR 637
+ F LL EN+ +A W + NI +IE ++ PL+ L+ S +
Sbjct: 334 LNAFPSLLSHQKENIRKEACWTISNITAGNTQQIQAIIESNLIPPLVHLL-SYADYKTKK 392
Query: 638 NVTWVIVN 661
W I N
Sbjct: 393 EACWAISN 400
Score = 46.4 bits (105), Expect = 4e-06
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Frame = +2
Query: 305 DELIAAGILPILVQCL-SRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLL 481
D ++ G+L L+ L S A + ++ W L+N+ G + N + AVP+ +LL
Sbjct: 198 DYVLGNGVLQPLLNILQSSASDVSMLRNATWTLSNLCRGKNPPPNWSTISVAVPILAKLL 257
Query: 482 MSPHENVCDQAVWALGNIIGDGPVLR-DFVIELGVVKPLLSLIKS---DIPIPFLRNV 643
S + A WA+ + + DGP + ++++G L+ L+ S +I P LR+V
Sbjct: 258 YSEDVEIIVDACWAI-SYLSDGPNEKIGAILDVGCAPRLVELLSSPSVNIQTPALRSV 314
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 33.5 bits (73), Expect = 0.033
Identities = 26/108 (24%), Positives = 44/108 (40%)
Frame = +2
Query: 170 IDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQC 349
+DK L ++ + +N ++ V Q +LS D + + + A GILP+L +
Sbjct: 512 LDKRTHLASLLSSLLGSLRDKNIGSKDTTVSQIASILSEDLSLKREIIQAHGILPLL-ET 570
Query: 350 LSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPH 493
L P +Q + +A KV AG +P+ L H
Sbjct: 571 LREIKTPDVQLLLLKLINTVAFDDHTTLQKVCFAGGLPLMLSFSNREH 618
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 30.7 bits (66), Expect = 0.23
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 518 ILPDHIRFHEVTSRAEGIQVLHRHGLLCLFVQTFRKLCLLK 396
I P+H+ + + R G+ + HR + FV +F K+ L K
Sbjct: 495 INPEHLNYFKFIGRVIGLAIFHRRFVDAFFVVSFYKMILQK 535
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.7 bits (66), Expect = 0.23
Identities = 20/58 (34%), Positives = 36/58 (62%)
Frame = -3
Query: 330 SIPAAMSSSIGGFLSHESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSISSSS 157
SIP + SS ++ SS + ++++ S FS++++ ++SS+ S + LSISSSS
Sbjct: 544 SIPTSSSSDFSSSITTISSGI---SSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSS 598
Score = 27.5 bits (58), Expect = 2.1
Identities = 36/162 (22%), Positives = 71/162 (43%)
Frame = -3
Query: 645 VTFLRNGIGMSDLIKLSSGLTTPSSITKSRRTGPSPIMLPRAHTA*SHTFS*GDIKS*RN 466
+T + +GI S + S ++ SSI S + PS L + ++ S TFS S +
Sbjct: 557 ITTISSGISSSSI---PSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSS 613
Query: 465 TGTAPAWTTLFVCADVPEAMFVKAQAVSNCNAGLSALERH*TRMGSIPAAMSSSIGGFLS 286
++ + ++ + + P + + S + S L + + +IP +SSS+ + S
Sbjct: 614 ISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILS---SSISTIP--ISSSLSTYSS 668
Query: 285 HESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSISSS 160
S T + +S ++ + SSS S + S+ S+
Sbjct: 669 --SVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVST 708
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 29.9 bits (64), Expect = 0.40
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 56 EMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDEL-VMNAANAE 232
E++ R ++ E K ++ + Q+RR + S E DKN++ DLDE +++ A
Sbjct: 51 ELKIRVAQLERERAKLEQSLSFQQRRAEMLEKSLRELRKDKNISVKDLDEFHLLDKPAAN 110
Query: 233 NPEAQLAA 256
N +A A
Sbjct: 111 NTKADAEA 118
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 29.1 bits (62), Expect = 0.70
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Frame = +2
Query: 2 DQAKNRMHVFKN-AGKDVDE---MRRR---RNEVTVELRKNKREETLQKRRNVPISYSTD 160
D +NR +N +G V+E + R+ R + ++ ++N+ T+QK V S+
Sbjct: 272 DFEENRKQYLQNKSGSPVEETAILNRKPTLRKKKSIPKKQNESSSTIQKENTVQQEASSS 331
Query: 161 EEEIDKNLATT 193
EEE K+L T
Sbjct: 332 EEEAVKSLPET 342
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 28.3 bits (60), Expect = 1.2
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Frame = +2
Query: 230 ENPEAQLAAVQQCRKLLS-CDKNPPIDELIAA-GILPILVQCLSRADNPALQFETAWALT 403
E+P +++A++ L++ C+K+ I I++ G+ + + + E+ AL
Sbjct: 738 ESPGVKISALRLISSLINKCEKDEDISSFISSKGVTSLWDKVYTGTPK-----ESEAALD 792
Query: 404 NIASGTSAQTNKVVHAGAVPVFLQLLMSPH-ENVCDQAVWALGNIIGDGPVL 556
+A A ++ H+ +P+ +LL + + +NV D +V AL II D P L
Sbjct: 793 VLAWVDKALVSRK-HSEGIPLAFKLLDTLNLQNVGDSSVKALSIIIKDDPAL 843
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 518 ILPDHIRFHEVTSRAEGIQVLHRHGLLCLF-VQTFRKLCLLKPKRSRIVTLDCQ 360
I P+H+ + R G+ + HR L F V ++KL K + + ++D +
Sbjct: 514 INPEHLNYFRFIGRVIGLAIFHRRFLDAFFVVSLYKKLLRKKVSLADMESIDAE 567
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 8 AKNRMHVFKNAGKDVDEMRR--RRNEVTVELRKNKREETLQKRRNVPISYSTDEEE 169
A M V +G DVD ++E T+E K K E Q+R+ + T ++E
Sbjct: 447 ANGEMEVTFTSGFDVDNNANSSEKDETTIEKYKRKAAERKQRRKELRQLKKTKDDE 502
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/41 (29%), Positives = 27/41 (65%)
Frame = +2
Query: 11 KNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRR 133
++R+ ++ K++DE RR++ E+ +E ++ E+ L+K R
Sbjct: 294 ESRLQKMQDNAKELDESRRKKIEL-LEKKERDEEQFLEKER 333
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -1
Query: 491 EVTSRAEG--IQVLHRHGLLCLFVQTFRKLCLLKPKRSRIVTLDCQPSKGTE 342
E+TS + +Q L+RHGL+ + + + + LK K + ++ + Q G E
Sbjct: 1657 EITSSNDQNIVQYLYRHGLIKVLIASRDVIYSLKAKSNAVIVMGTQYYDGKE 1708
>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
1|||Manual
Length = 863
Score = 27.1 bits (57), Expect = 2.8
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 23/148 (15%)
Frame = +2
Query: 161 EEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLS--CDKNPPIDE------LI 316
EEEI+ NL + +L A + A+ AA LL C+++ DE +
Sbjct: 288 EEEIEVNLEIQEAQDLNEVPARQNHGFARAAAADILPVLLKLLCNQDEDADEDDWNISMA 347
Query: 317 AAGILPILVQCLSRAD-NPALQF-------------ETA-WALTNIASGTSAQTNKVVHA 451
AA L + Q + NP L F E A A ++ G + +
Sbjct: 348 AATCLQLFAQVVGDLIVNPVLAFVEQNIQNPDWHQREAAVMAFGSVLEGPNVAMLTPLVN 407
Query: 452 GAVPVFLQLLMSPHENVCDQAVWALGNI 535
A+PV + +++ P V D WALG I
Sbjct: 408 QALPVLINMMVDPVIFVKDTTAWALGQI 435
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.7
Identities = 36/148 (24%), Positives = 60/148 (40%)
Frame = -3
Query: 600 LSSGLTTPSSITKSRRTGPSPIMLPRAHTA*SHTFS*GDIKS*RNTGTAPAWTTLFVCAD 421
L S + SI+ S + P+ + S T S S ++ T + +
Sbjct: 149 LPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSS 208
Query: 420 VPEAMFVKAQAVSNCNAGLSALERH*TRMGSIPAAMSSSIGGFLSHESSFLHCCTAANCA 241
+ V + + S ++ S L SIP+ SSS S SS + A+ +
Sbjct: 209 YLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSS--SSSSTASSS 266
Query: 240 SGFSALAAFITSSSRSVVARFLSISSSS 157
S S++ + +SSS S + +ISSSS
Sbjct: 267 SSSSSIISSSSSSSSSPTSTSSTISSSS 294
Score = 26.2 bits (55), Expect = 4.9
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 1/169 (0%)
Frame = -3
Query: 657 TITHVTFLRNGIGMSDLIKLSSGLTTPSSITKS-RRTGPSPIMLPRAHTA*SHTFS*GDI 481
T T T + S SS +++ SS + S T S M + + S T S I
Sbjct: 284 TSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTI 343
Query: 480 KS*RNTGTAPAWTTLFVCADVPEAMFVKAQAVSNCNAGLSALERH*TRMGSIPAAMSSSI 301
S + ++P+ ++ ++ + VS+ ++ S+ + S PA+ SS
Sbjct: 344 SS---SSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHS 400
Query: 300 GGFLSHESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSISSSSV 154
SH+SS ++A +S F + SSS S S+SS +
Sbjct: 401 SSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSKPI 449
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/50 (22%), Positives = 27/50 (54%)
Frame = +2
Query: 56 EMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDE 205
E++R++++ E K KR++ L+ + + DE++ ++ D D+
Sbjct: 5 ELKRKKHQSGNEEVKEKRQKPLKNDKKIAEELPQDEDDYEQEEENEDADQ 54
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +2
Query: 5 QAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPIS 148
Q K F G +++ ++ + ELRK K+E +++ + +S
Sbjct: 996 QEKEEGDTFDAFGNKIEKAKKAKKLTGAELRKKKKERMARRKAGLEVS 1043
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 232 FCVGSVHHQLIKVGGSEVLVDLLLI 158
+C G H ++ +GGS V +DL+ I
Sbjct: 263 YCTGDGHKMVMSIGGSTVDLDLVQI 287
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 581 VVKPLLSLIKSDIPIPFLRNVTWVIVNLCR 670
V++P SL++ D P+P VT I++ CR
Sbjct: 231 VIRPYTSLVEEDDPVPV---VTDTIISRCR 257
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = -1
Query: 512 PDHIRFHEVTSRAEGIQVLHRHGLLCLFVQTFRKLCLLKP 393
PD + R G+ + HR L FV F K L KP
Sbjct: 401 PDFRSYFRFVGRVMGLAIYHRRYLDVQFVLPFYKRILQKP 440
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 26.2 bits (55), Expect = 4.9
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Frame = +2
Query: 65 RRRNEVTVELRKNKREETLQKRRNVPISYSTDEE-------EIDKNLATTDLDELVMNAA 223
R+R++ ++KN R+++ Q++RN+ ++EE EID + + +
Sbjct: 113 RKRSDKLKTMKKN-RKQSFQRKRNILEDGKSEEEKFPMKCDEIDPYSRQAIVIRYISDEV 171
Query: 224 NAENPEA-QLAAVQQCRKLLSCDK--NPPIDELIAAGIL 331
EN Q+ + Q KL+ K P +D + GI+
Sbjct: 172 AKENIGGNQVYLIHQLLKLVRAPKFEAPEVDNYVVMGIV 210
>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -3
Query: 612 DLIKLSSGLTTPSSITKSRRTGPSPI--MLPRAH 517
D I L L+TP + ++R PSPI LP H
Sbjct: 28 DSIVLEQELSTPKQVNQARPKFPSPITPTLPEMH 61
>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 332
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 515 VWALGNIIGDGPVLRDFVIELGVVKPL 595
V+A+G+I GD P D + GVV P+
Sbjct: 59 VYAIGDIHGDFPNALDVLSAAGVVSPV 85
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 21.8 bits (44), Expect(2) = 8.2
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 110 EETLQKRRNVPISYSTDEEEIDKNLATTDLD 202
E+T+ + + I YST + ++ A DL+
Sbjct: 94 EKTINNNQELRIKYSTSPQRFIESEADLDLE 124
Score = 21.8 bits (44), Expect(2) = 8.2
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = +2
Query: 224 NAENPEAQLAAVQQCRKLLSCDKNPP-----IDELIAAGILPILVQCLSRAD 364
N EN + + ++ +L D +P LI +G+LP+L + R D
Sbjct: 155 NHENADITITVLELLIELTDEDVDPDALNSLFTSLIDSGLLPLLSNTIKRFD 206
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = +2
Query: 23 HVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNV 139
HV + K +E R+R+ E+ E+R+++ +E +K++ +
Sbjct: 352 HVDSISIKAQEEERKRQAEIEKEIRQSRLQEEERKKKKL 390
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 83 TVELRKNKREETLQKRRNVPISYSTDEEEIDKNL 184
T+E KN +T + ++ +SY D + +DK +
Sbjct: 137 TLETEKNLNSKTSESLKSPTLSYPFDLDSLDKRI 170
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 149 YSTDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDEL 313
+S+DEEE+D T+ +E N A E + +Q + + +K P DE+
Sbjct: 146 FSSDEEEMDDISVTSSEEEEEENGARIEELNSDEEDAEQAEEEI-LEKPVPKDEV 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,177,513
Number of Sequences: 5004
Number of extensions: 68580
Number of successful extensions: 321
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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