Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27b09
(743 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 270 7e-73
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 270 7e-73
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 217 9e-57
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 154 7e-38
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 154 7e-38
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 154 7e-38
Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical pr... 47 1e-05
AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alph... 47 1e-05
AF024493-2|AAB70323.1| 322|Caenorhabditis elegans Hypothetical ... 39 0.003
Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical pr... 37 0.017
AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical... 37 0.017
AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical... 37 0.017
AF003136-1|AAK21379.3| 896|Caenorhabditis elegans Importin beta... 34 0.12
Z83120-3|CAB05587.1| 419|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical pr... 33 0.21
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ... 31 0.65
AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical ... 31 0.86
AF067608-11|AAC17656.2| 368|Caenorhabditis elegans Hypothetical... 31 1.1
AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ... 30 1.5
U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily ass... 29 3.5
AF003389-4|AAN63407.1| 598|Caenorhabditis elegans Hypothetical ... 29 3.5
AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical ... 29 3.5
AC006621-3|AAK68263.1| 368|Caenorhabditis elegans Hypothetical ... 29 3.5
Z79755-7|CAB02103.1| 466|Caenorhabditis elegans Hypothetical pr... 29 4.6
U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1 prepropro... 29 4.6
AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical... 29 4.6
L23645-8|AAK26133.1| 282|Caenorhabditis elegans Peroxisome asse... 28 6.1
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z75547-11|CAA99905.4| 394|Caenorhabditis elegans Hypothetical p... 28 8.0
M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical pr... 28 8.0
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 270 bits (662), Expect = 7e-73
Identities = 136/241 (56%), Positives = 167/241 (69%), Gaps = 2/241 (0%)
Frame = +2
Query: 8 AKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLA 187
+ NR +KN K+ + +RNE V +RK+KREE + KRRN+ D E
Sbjct: 2 SSNRQAYYKNNAKE-QIGKEKRNEEVVSIRKDKREEAISKRRNINTQIEDDSETSTTPPG 60
Query: 188 TTDLD--ELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQCLSRA 361
D + L + AA + +P QL AVQQ RK+LS D+NPPID+LI +GILP+LVQCLS
Sbjct: 61 PFDANLLRLTVAAAQSSDPAEQLTAVQQARKMLSTDRNPPIDDLIGSGILPVLVQCLSST 120
Query: 362 DNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDQAVWALGNIIG 541
D P LQFE AWALTNIASGTS QT VV+AGAVP+FLQLL + NVC+Q+VWALGNIIG
Sbjct: 121 D-PNLQFEAAWALTNIASGTSEQTQAVVNAGAVPLFLQLLSCGNLNVCEQSVWALGNIIG 179
Query: 542 DGPVLRDFVIELGVVKPLLSLIKSDIPIPFLRNVTWVIVNLCRSKDPPPPLKTIQEILPG 721
DGP RD+ +ELG+++PLL I +IPI FLRNVTWVIVNLCR KDP P ++ ILP
Sbjct: 180 DGPHFRDYCLELGILQPLLQFINPEIPIGFLRNVTWVIVNLCRCKDPAPSPAVVRTILPA 239
Query: 722 L 724
L
Sbjct: 240 L 240
Score = 46.8 bits (106), Expect = 2e-05
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 1/131 (0%)
Frame = +2
Query: 293 NPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFL 472
N I +I A ++ LV L D +Q A+ NI +GT QT V+ +G +
Sbjct: 267 NEHIQMVIEAQVVTHLVPLLGHVD-VKVQTAALRAVGNIVTGTDEQTQLVLDSGVLRFMP 325
Query: 473 QLLMSPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLLSLI-KSDIPIPFLRNVTW 649
LL E + +AVW + NI V + G++ ++ L+ + D P + W
Sbjct: 326 GLLAHYKEKINKEAVWFVSNITAGNQQQVQDVFDAGIMPMIIHLLDRGDFPTQ--KEAAW 383
Query: 650 VIVNLCRSKDP 682
I N+ S P
Sbjct: 384 AISNVTISGRP 394
Score = 31.5 bits (68), Expect = 0.65
Identities = 24/101 (23%), Positives = 37/101 (36%)
Frame = +2
Query: 305 DELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLM 484
D + GIL L+Q ++ W + N+ + V +P L+
Sbjct: 186 DYCLELGILQPLLQFINPEIPIGFLRNVTWVIVNLCRCKDPAPSPAVVRTILPALSLLIH 245
Query: 485 SPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLLSLI 607
N+ VWAL + G VIE VV L+ L+
Sbjct: 246 HQDTNILIDTVWALSYLTDGGNEHIQMVIEAQVVTHLVPLL 286
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 270 bits (662), Expect = 7e-73
Identities = 136/241 (56%), Positives = 167/241 (69%), Gaps = 2/241 (0%)
Frame = +2
Query: 8 AKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLA 187
+ NR +KN K+ + +RNE V +RK+KREE + KRRN+ D E
Sbjct: 2 SSNRQAYYKNNAKE-QIGKEKRNEEVVSIRKDKREEAISKRRNINTQIEDDSETSTTPPG 60
Query: 188 TTDLD--ELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQCLSRA 361
D + L + AA + +P QL AVQQ RK+LS D+NPPID+LI +GILP+LVQCLS
Sbjct: 61 PFDANLLRLTVAAAQSSDPAEQLTAVQQARKMLSTDRNPPIDDLIGSGILPVLVQCLSST 120
Query: 362 DNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDQAVWALGNIIG 541
D P LQFE AWALTNIASGTS QT VV+AGAVP+FLQLL + NVC+Q+VWALGNIIG
Sbjct: 121 D-PNLQFEAAWALTNIASGTSEQTQAVVNAGAVPLFLQLLSCGNLNVCEQSVWALGNIIG 179
Query: 542 DGPVLRDFVIELGVVKPLLSLIKSDIPIPFLRNVTWVIVNLCRSKDPPPPLKTIQEILPG 721
DGP RD+ +ELG+++PLL I +IPI FLRNVTWVIVNLCR KDP P ++ ILP
Sbjct: 180 DGPHFRDYCLELGILQPLLQFINPEIPIGFLRNVTWVIVNLCRCKDPAPSPAVVRTILPA 239
Query: 722 L 724
L
Sbjct: 240 L 240
Score = 46.8 bits (106), Expect = 2e-05
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 1/131 (0%)
Frame = +2
Query: 293 NPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFL 472
N I +I A ++ LV L D +Q A+ NI +GT QT V+ +G +
Sbjct: 267 NEHIQMVIEAQVVTHLVPLLGHVD-VKVQTAALRAVGNIVTGTDEQTQLVLDSGVLRFMP 325
Query: 473 QLLMSPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLLSLI-KSDIPIPFLRNVTW 649
LL E + +AVW + NI V + G++ ++ L+ + D P + W
Sbjct: 326 GLLAHYKEKINKEAVWFVSNITAGNQQQVQDVFDAGIMPMIIHLLDRGDFPTQ--KEAAW 383
Query: 650 VIVNLCRSKDP 682
I N+ S P
Sbjct: 384 AISNVTISGRP 394
Score = 31.5 bits (68), Expect = 0.65
Identities = 24/101 (23%), Positives = 37/101 (36%)
Frame = +2
Query: 305 DELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLM 484
D + GIL L+Q ++ W + N+ + V +P L+
Sbjct: 186 DYCLELGILQPLLQFINPEIPIGFLRNVTWVIVNLCRCKDPAPSPAVVRTILPALSLLIH 245
Query: 485 SPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLLSLI 607
N+ VWAL + G VIE VV L+ L+
Sbjct: 246 HQDTNILIDTVWALSYLTDGGNEHIQMVIEAQVVTHLVPLL 286
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 217 bits (529), Expect = 9e-57
Identities = 102/150 (68%), Positives = 120/150 (80%)
Frame = +2
Query: 275 LLSCDKNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAG 454
+LS D+NPPID+LI +GILP+LVQCLS D P LQFE AWALTNIASGTS QT VV+AG
Sbjct: 1 MLSTDRNPPIDDLIGSGILPVLVQCLSSTD-PNLQFEAAWALTNIASGTSEQTQAVVNAG 59
Query: 455 AVPVFLQLLMSPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLLSLIKSDIPIPFL 634
AVP+FLQLL + NVC+Q+VWALGNIIGDGP RD+ +ELG+++PLL I +IPI FL
Sbjct: 60 AVPLFLQLLSCGNLNVCEQSVWALGNIIGDGPHFRDYCLELGILQPLLQFINPEIPIGFL 119
Query: 635 RNVTWVIVNLCRSKDPPPPLKTIQEILPGL 724
RNVTWVIVNLCR KDP P ++ ILP L
Sbjct: 120 RNVTWVIVNLCRCKDPAPSPAVVRTILPAL 149
Score = 46.8 bits (106), Expect = 2e-05
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 1/131 (0%)
Frame = +2
Query: 293 NPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFL 472
N I +I A ++ LV L D +Q A+ NI +GT QT V+ +G +
Sbjct: 176 NEHIQMVIEAQVVTHLVPLLGHVD-VKVQTAALRAVGNIVTGTDEQTQLVLDSGVLRFMP 234
Query: 473 QLLMSPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLLSLI-KSDIPIPFLRNVTW 649
LL E + +AVW + NI V + G++ ++ L+ + D P + W
Sbjct: 235 GLLAHYKEKINKEAVWFVSNITAGNQQQVQDVFDAGIMPMIIHLLDRGDFPTQ--KEAAW 292
Query: 650 VIVNLCRSKDP 682
I N+ S P
Sbjct: 293 AISNVTISGRP 303
Score = 31.5 bits (68), Expect = 0.65
Identities = 24/101 (23%), Positives = 37/101 (36%)
Frame = +2
Query: 305 DELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLM 484
D + GIL L+Q ++ W + N+ + V +P L+
Sbjct: 95 DYCLELGILQPLLQFINPEIPIGFLRNVTWVIVNLCRCKDPAPSPAVVRTILPALSLLIH 154
Query: 485 SPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLLSLI 607
N+ VWAL + G VIE VV L+ L+
Sbjct: 155 HQDTNILIDTVWALSYLTDGGNEHIQMVIEAQVVTHLVPLL 195
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 154 bits (373), Expect = 7e-38
Identities = 91/248 (36%), Positives = 137/248 (55%), Gaps = 12/248 (4%)
Frame = +2
Query: 17 RMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNV--------PISYSTDEEEI 172
R+ +KN K +E+RRRR E +VE+RK K + + KRRN+ S + E+I
Sbjct: 21 RLQQYKNLTKH-EELRRRRTECSVEIRKQKGADMMMKRRNIVDVDEGGNSESELEEPEKI 79
Query: 173 DKNLATTDLDELVMNAANAENP--EAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQ 346
++T L + A + NP + + + RK LS KNPPIDE+I G+L LVQ
Sbjct: 80 SHQQSSTRLSNDEIRAILSNNPSEDDMVRCFESLRKSLSKTKNPPIDEVIHCGLLQALVQ 139
Query: 347 CLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDQAVWAL 526
LS +N +Q+E AWALTNI SG++ QT V AG + L + + +QA+WA+
Sbjct: 140 ALS-VENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQALWAV 198
Query: 527 GNIIGDGPVLRDFVIELGVVKPLLSLIK--SDIPIPFLRNVTWVIVNLCRSKDPPPPLKT 700
NI GD LRD+VI+ V+ L+ L++ + +R + W N+CR K+P PL+
Sbjct: 199 ANIAGDSSQLRDYVIKCHGVEALMHLMEKVDQLGDSHVRTIAWAFSNMCRHKNPHAPLEV 258
Query: 701 IQEILPGL 724
++ + GL
Sbjct: 259 LRVLSKGL 266
Score = 44.8 bits (101), Expect = 7e-05
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Frame = +2
Query: 143 ISYSTD--EEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELI 316
+SY TD +E+I+ + L +V AEN +A + ++ + +I
Sbjct: 285 VSYLTDGPDEQIELARESGVLPHVVAFFKEAEN---LVAPALRTLGNVATGNDSLTQAVI 341
Query: 317 AAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHE 496
G L ++ + + + ++ E W ++NI +GT Q V+ A +PV + +L S
Sbjct: 342 DLGSLDEILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVLINVLKSGDH 401
Query: 497 NVCDQAVWALGNIIGDG 547
+A WAL N+ G
Sbjct: 402 KCQFEASWALSNLAQGG 418
Score = 41.1 bits (92), Expect = 8e-04
Identities = 28/125 (22%), Positives = 52/125 (41%)
Frame = +2
Query: 290 KNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVF 469
KNP + + LV+ + D Q + WA++ + G Q +G +P
Sbjct: 250 KNPHAPLEVLRVLSKGLVKLVQHTDRQVRQ-DACWAVSYLTDGPDEQIELARESGVLPHV 308
Query: 470 LQLLMSPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLLSLIKSDIPIPFLRNVTW 649
+ EN+ A+ LGN+ L VI+LG + +L L++ ++ W
Sbjct: 309 VAFFKEA-ENLVAPALRTLGNVATGNDSLTQAVIDLGSLDEILPLMEKTRSSSIVKECCW 367
Query: 650 VIVNL 664
++ N+
Sbjct: 368 LVSNI 372
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 154 bits (373), Expect = 7e-38
Identities = 91/248 (36%), Positives = 137/248 (55%), Gaps = 12/248 (4%)
Frame = +2
Query: 17 RMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNV--------PISYSTDEEEI 172
R+ +KN K +E+RRRR E +VE+RK K + + KRRN+ S + E+I
Sbjct: 21 RLQQYKNLTKH-EELRRRRTECSVEIRKQKGADMMMKRRNIVDVDEGGNSESELEEPEKI 79
Query: 173 DKNLATTDLDELVMNAANAENP--EAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQ 346
++T L + A + NP + + + RK LS KNPPIDE+I G+L LVQ
Sbjct: 80 SHQQSSTRLSNDEIRAILSNNPSEDDMVRCFESLRKSLSKTKNPPIDEVIHCGLLQALVQ 139
Query: 347 CLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDQAVWAL 526
LS +N +Q+E AWALTNI SG++ QT V AG + L + + +QA+WA+
Sbjct: 140 ALS-VENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQALWAV 198
Query: 527 GNIIGDGPVLRDFVIELGVVKPLLSLIK--SDIPIPFLRNVTWVIVNLCRSKDPPPPLKT 700
NI GD LRD+VI+ V+ L+ L++ + +R + W N+CR K+P PL+
Sbjct: 199 ANIAGDSSQLRDYVIKCHGVEALMHLMEKVDQLGDSHVRTIAWAFSNMCRHKNPHAPLEV 258
Query: 701 IQEILPGL 724
++ + GL
Sbjct: 259 LRVLSKGL 266
Score = 44.8 bits (101), Expect = 7e-05
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Frame = +2
Query: 143 ISYSTD--EEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELI 316
+SY TD +E+I+ + L +V AEN +A + ++ + +I
Sbjct: 285 VSYLTDGPDEQIELARESGVLPHVVAFFKEAEN---LVAPALRTLGNVATGNDSLTQAVI 341
Query: 317 AAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHE 496
G L ++ + + + ++ E W ++NI +GT Q V+ A +PV + +L S
Sbjct: 342 DLGSLDEILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVLINVLKSGDH 401
Query: 497 NVCDQAVWALGNIIGDG 547
+A WAL N+ G
Sbjct: 402 KCQFEASWALSNLAQGG 418
Score = 41.1 bits (92), Expect = 8e-04
Identities = 28/125 (22%), Positives = 52/125 (41%)
Frame = +2
Query: 290 KNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVF 469
KNP + + LV+ + D Q + WA++ + G Q +G +P
Sbjct: 250 KNPHAPLEVLRVLSKGLVKLVQHTDRQVRQ-DACWAVSYLTDGPDEQIELARESGVLPHV 308
Query: 470 LQLLMSPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLLSLIKSDIPIPFLRNVTW 649
+ EN+ A+ LGN+ L VI+LG + +L L++ ++ W
Sbjct: 309 VAFFKEA-ENLVAPALRTLGNVATGNDSLTQAVIDLGSLDEILPLMEKTRSSSIVKECCW 367
Query: 650 VIVNL 664
++ N+
Sbjct: 368 LVSNI 372
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 154 bits (373), Expect = 7e-38
Identities = 91/248 (36%), Positives = 137/248 (55%), Gaps = 12/248 (4%)
Frame = +2
Query: 17 RMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNV--------PISYSTDEEEI 172
R+ +KN K +E+RRRR E +VE+RK K + + KRRN+ S + E+I
Sbjct: 21 RLQQYKNLTKH-EELRRRRTECSVEIRKQKGADMMMKRRNIVDVDEGGNSESELEEPEKI 79
Query: 173 DKNLATTDLDELVMNAANAENP--EAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQ 346
++T L + A + NP + + + RK LS KNPPIDE+I G+L LVQ
Sbjct: 80 SHQQSSTRLSNDEIRAILSNNPSEDDMVRCFESLRKSLSKTKNPPIDEVIHCGLLQALVQ 139
Query: 347 CLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDQAVWAL 526
LS +N +Q+E AWALTNI SG++ QT V AG + L + + +QA+WA+
Sbjct: 140 ALS-VENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQALWAV 198
Query: 527 GNIIGDGPVLRDFVIELGVVKPLLSLIK--SDIPIPFLRNVTWVIVNLCRSKDPPPPLKT 700
NI GD LRD+VI+ V+ L+ L++ + +R + W N+CR K+P PL+
Sbjct: 199 ANIAGDSSQLRDYVIKCHGVEALMHLMEKVDQLGDSHVRTIAWAFSNMCRHKNPHAPLEV 258
Query: 701 IQEILPGL 724
++ + GL
Sbjct: 259 LRVLSKGL 266
Score = 44.8 bits (101), Expect = 7e-05
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Frame = +2
Query: 143 ISYSTD--EEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELI 316
+SY TD +E+I+ + L +V AEN +A + ++ + +I
Sbjct: 285 VSYLTDGPDEQIELARESGVLPHVVAFFKEAEN---LVAPALRTLGNVATGNDSLTQAVI 341
Query: 317 AAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHE 496
G L ++ + + + ++ E W ++NI +GT Q V+ A +PV + +L S
Sbjct: 342 DLGSLDEILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVLINVLKSGDH 401
Query: 497 NVCDQAVWALGNIIGDG 547
+A WAL N+ G
Sbjct: 402 KCQFEASWALSNLAQGG 418
Score = 41.1 bits (92), Expect = 8e-04
Identities = 28/125 (22%), Positives = 52/125 (41%)
Frame = +2
Query: 290 KNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVF 469
KNP + + LV+ + D Q + WA++ + G Q +G +P
Sbjct: 250 KNPHAPLEVLRVLSKGLVKLVQHTDRQVRQ-DACWAVSYLTDGPDEQIELARESGVLPHV 308
Query: 470 LQLLMSPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLLSLIKSDIPIPFLRNVTW 649
+ EN+ A+ LGN+ L VI+LG + +L L++ ++ W
Sbjct: 309 VAFFKEA-ENLVAPALRTLGNVATGNDSLTQAVIDLGSLDEILPLMEKTRSSSIVKECCW 367
Query: 650 VIVNL 664
++ N+
Sbjct: 368 LVSNI 372
>Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical
protein T19B10.7 protein.
Length = 524
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/58 (34%), Positives = 36/58 (62%)
Frame = +2
Query: 11 KNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNL 184
+ R ++K+ +D +EMRR+R E V++RKN+R+E ++ R + + S EE + L
Sbjct: 10 EERSKMYKSNVRDQNEMRRKRREDEVQIRKNRRDEKFERNRQITVQRSLSHEETSELL 67
>AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alpha 1
protein.
Length = 524
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/58 (34%), Positives = 36/58 (62%)
Frame = +2
Query: 11 KNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNL 184
+ R ++K+ +D +EMRR+R E V++RKN+R+E ++ R + + S EE + L
Sbjct: 10 EERSKMYKSNVRDQNEMRRKRREDEVQIRKNRRDEKFERNRQITVQRSLSHEETSELL 67
>AF024493-2|AAB70323.1| 322|Caenorhabditis elegans Hypothetical
protein F23F1.5 protein.
Length = 322
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = +2
Query: 17 RMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTD 196
R +KN K ++ +RR E T+E +KN R +T K RN+ T +E+ ++ + TT
Sbjct: 28 RYSQYKNLTKAAEQQAKRREE-TLERQKNGRFDTFMKLRNLAFDDVTSDEDDEQKIETTT 86
Query: 197 LDE 205
++
Sbjct: 87 AEK 89
>Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical
protein F53B2.5 protein.
Length = 447
Score = 36.7 bits (81), Expect = 0.017
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +2
Query: 377 QFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDQAVWALGNIIGD 544
+ W +TN+ + T+ V++ + + ++L+ S + + Q VWA+ NI D
Sbjct: 58 EVNAVWIITNMCCISQEVTHLFVNSNCLDILIKLVRSQNARLSSQTVWAIANIAAD 113
Score = 33.5 bits (73), Expect = 0.16
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Frame = +2
Query: 314 IAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPH 493
+ + L IL++ L R+ N L +T WA+ NIA+ S+ K + + + L + +
Sbjct: 80 VNSNCLDILIK-LVRSQNARLSSQTVWAIANIAADCSSCKLKCRSPKLLKILARNLQTSY 138
Query: 494 E-NVCD--QAVWALGNIIGDG------PVLRDFVIELGVV 586
+ + D Q +W + NI G PV R + L +
Sbjct: 139 KLDDADRRQLIWCVNNIFSGGRTTMPSPVARSLICALSAI 178
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 404 NIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDQAVWALGNIIGDGPVLRDFVIE 574
NIA G QT+ +V V + + MS E+ +A W + N++ P D++++
Sbjct: 246 NIAVGNDVQTDLLVDNPKFRVVMNIAMSSPEHH-SEAAWIISNVVAGAPRHVDYIMD 301
>AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical
protein Y105C5B.21b protein.
Length = 1084
Score = 36.7 bits (81), Expect = 0.017
Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 9/149 (6%)
Frame = +2
Query: 197 LDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQCLSRADNPAL 376
L E++ ++A+ + QL A + L D N +E G +P L+ L R+D P +
Sbjct: 523 LKEVIEYLSSADK-DKQLNASGYLQHLTYTD-NQIKEETREYGGIPKLIALL-RSDTPRI 579
Query: 377 QFETAWALTNIASGTSAQTNK--VVHAGAVPVFLQLLMSPHE-NVCDQAVWALGNIIGDG 547
Q L N++ G NK V+ A V + ++L + H+ +V ++A AL N+
Sbjct: 580 QKNACACLKNLSFGKENDANKLAVMEADGVRLIAEVLRTTHDASVKEEAAAALWNLSSAD 639
Query: 548 ---PVLRDFVIEL---GVVKPLLSLIKSD 616
PV+ + E+ V+ P+L++ SD
Sbjct: 640 MLKPVILESATEILSQQVIAPVLAVGTSD 668
>AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical
protein Y105C5B.21a protein.
Length = 1254
Score = 36.7 bits (81), Expect = 0.017
Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 9/149 (6%)
Frame = +2
Query: 197 LDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQCLSRADNPAL 376
L E++ ++A+ + QL A + L D N +E G +P L+ L R+D P +
Sbjct: 693 LKEVIEYLSSADK-DKQLNASGYLQHLTYTD-NQIKEETREYGGIPKLIALL-RSDTPRI 749
Query: 377 QFETAWALTNIASGTSAQTNK--VVHAGAVPVFLQLLMSPHE-NVCDQAVWALGNIIGDG 547
Q L N++ G NK V+ A V + ++L + H+ +V ++A AL N+
Sbjct: 750 QKNACACLKNLSFGKENDANKLAVMEADGVRLIAEVLRTTHDASVKEEAAAALWNLSSAD 809
Query: 548 ---PVLRDFVIEL---GVVKPLLSLIKSD 616
PV+ + E+ V+ P+L++ SD
Sbjct: 810 MLKPVILESATEILSQQVIAPVLAVGTSD 838
>AF003136-1|AAK21379.3| 896|Caenorhabditis elegans Importin beta
family protein 1 protein.
Length = 896
Score = 33.9 bits (74), Expect = 0.12
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Frame = +2
Query: 365 NPALQFETA--WALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDQAVWALGNII 538
NP +++ A A +I G + + A+P + + + NV D A W+LG +I
Sbjct: 383 NPDWKYKEAAIMAFGSILDGPDPKKLLPMAQEALPAIVAAMCDKNVNVRDTAAWSLGRVI 442
Query: 539 GDGPVLRDFVIELGVVKPLLSLIKSDIPIPFLRNVTWVIVNLCRS 673
L + L V P+LS P NV W +V+L ++
Sbjct: 443 DTCSELANNAELLQSVLPVLSNGLHQEP-RVANNVCWALVSLVKA 486
>Z83120-3|CAB05587.1| 419|Caenorhabditis elegans Hypothetical
protein R06A4.4b protein.
Length = 419
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +2
Query: 467 FLQLLMSPHE-NVCDQAVWALGNI-IGDGPVLRDFVIELGVVKPLLSLIKS 613
FL + P + +VC+ A+WALG + + GP ++ F+ +++PL+ +I S
Sbjct: 240 FLAQNLDPSKISVCNNAIWALGELALKMGPAMKQFIGP--IIEPLIVVINS 288
>Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical
protein R06A4.4a protein.
Length = 883
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +2
Query: 467 FLQLLMSPHE-NVCDQAVWALGNI-IGDGPVLRDFVIELGVVKPLLSLIKS 613
FL + P + +VC+ A+WALG + + GP ++ F+ +++PL+ +I S
Sbjct: 704 FLAQNLDPSKISVCNNAIWALGELALKMGPAMKQFIGP--IIEPLIVVINS 752
>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
protein Y108G3AL.7 protein.
Length = 1192
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +2
Query: 98 KNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAANA 229
+ +R + +KR++ S T +EE ++LATTD + V+N A++
Sbjct: 260 ERERARSRRKRKDEASSAVTSDEEDQEDLATTDSENPVINGASS 303
>AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical
protein Y55B1BR.3 protein.
Length = 679
Score = 31.1 bits (67), Expect = 0.86
Identities = 18/80 (22%), Positives = 43/80 (53%)
Frame = +2
Query: 35 NAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVM 214
++ D EM RRR + + K +++ +++R V S S DE+E +K + + +
Sbjct: 246 DSSDDDSEMERRRKKSKKSKKSKKFKKSEKRKRAVNDSSSDDEDEEEKPEKRSKKSKKAV 305
Query: 215 NAANAENPEAQLAAVQQCRK 274
+++E+ E + ++ ++ +K
Sbjct: 306 IDSSSEDEEEEKSSKKRSKK 325
>AF067608-11|AAC17656.2| 368|Caenorhabditis elegans Hypothetical
protein B0511.11 protein.
Length = 368
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 104 KREETLQKRRNVPIS--YSTDEEEIDKNLATTDLDE 205
K+E+ KR NVP++ YS + KN +TT L E
Sbjct: 98 KKEDDKSKRENVPLTVVYSNPSISVSKNFSTTPLAE 133
>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
protein Y113G7C.1 protein.
Length = 1494
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +2
Query: 2 DQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDK 178
D+ + +M+V + A KD E R ++++ E R+ K EE +K + D+E+IDK
Sbjct: 1043 DEQRRKMNV-ERAKKD--EERAKKDKRDAEERRKKDEERAKKDKEDAKKAKEDQEKIDK 1098
>U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily
assigned gene nameprotein 312 protein.
Length = 656
Score = 29.1 bits (62), Expect = 3.5
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Frame = +2
Query: 44 KDVDEMRRRRNEVTVELRKN-KREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNA 220
K+ +EMR+R ++ E+R N +R + ++K ++E+ L + + +
Sbjct: 222 KEKEEMRQRMSDEMSEMRNNIERLQKMEKALERENERLNHQKELSDKLKVVNEENNDLRQ 281
Query: 221 ANAENPEAQLAAVQQCRKLLSCDKNPPIDELIA-AGIL 331
AEN +LA ++ + C+ + DEL A GIL
Sbjct: 282 NLAEN-HLELAMIKSELAQVRCEFDQKQDELSARRGIL 318
>AF003389-4|AAN63407.1| 598|Caenorhabditis elegans Hypothetical
protein F23H11.4b protein.
Length = 598
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 86 VELRKNKREETLQKR-RNVPISYSTDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQ 262
V L +K+E+ L R RN+ +S+ DE+ + + T D+ + + A + L V
Sbjct: 341 VSLTSSKKEKRLHCRLRNMQLSFHDDEDSTEPSNGTFDIKGIYLFRHMASDTPYILIHVG 400
Query: 263 QCRKLLS-CDKNPP 301
+ R ++S ++PP
Sbjct: 401 EKRNVISFIPEDPP 414
>AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical
protein F23H11.4a protein.
Length = 1003
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 86 VELRKNKREETLQKR-RNVPISYSTDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQ 262
V L +K+E+ L R RN+ +S+ DE+ + + T D+ + + A + L V
Sbjct: 341 VSLTSSKKEKRLHCRLRNMQLSFHDDEDSTEPSNGTFDIKGIYLFRHMASDTPYILIHVG 400
Query: 263 QCRKLLS-CDKNPP 301
+ R ++S ++PP
Sbjct: 401 EKRNVISFIPEDPP 414
>AC006621-3|AAK68263.1| 368|Caenorhabditis elegans Hypothetical
protein C52A10.3 protein.
Length = 368
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -2
Query: 316 YELINRRVFITREQFSALLHS 254
YEL+ R +F+T EQ S +L+S
Sbjct: 199 YELVGREIFLTSEQLSKVLNS 219
>Z79755-7|CAB02103.1| 466|Caenorhabditis elegans Hypothetical
protein F43G9.10 protein.
Length = 466
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +2
Query: 32 KNAGKDVDEMRRRRNEVTVE--LRKNKREETLQKRRNV--PISYSTDEEEIDKNLATTDL 199
+ +D D RRRR E + E R+++R E +RR V P E+E +N ++
Sbjct: 69 RETDRDDDRRRRRRRESSDEEDRRRHRRHEDYGRRRQVEKPEVLGKVEDESSENEQESEE 128
Query: 200 DE 205
DE
Sbjct: 129 DE 130
>U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1
preproprotein protein.
Length = 1042
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Frame = -3
Query: 429 CADVPEAMFVKAQAVSNCNAGLSALERH*TRMGSIPAAMSSSIGGFLSHESSFLHCCTAA 250
C + A +NC +G + M S+ +A + S HC T A
Sbjct: 626 CKSIASAAVGLTSDGTNCASGRVCVAGSCVEMSSVSSATACPTNNLALLCSGHGHCTTTA 685
Query: 249 NCA--SGFSALAAFITSSS 199
C +G+S +A I S+S
Sbjct: 686 RCVCFNGWSGVACDIRSNS 704
>AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical
protein Y37D8A.13 protein.
Length = 1042
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Frame = -3
Query: 429 CADVPEAMFVKAQAVSNCNAGLSALERH*TRMGSIPAAMSSSIGGFLSHESSFLHCCTAA 250
C + A +NC +G + M S+ +A + S HC T A
Sbjct: 626 CKSIASAAVGLTSDGTNCASGRVCVAGSCVEMSSVSSATACPTNNLALLCSGHGHCTTTA 685
Query: 249 NCA--SGFSALAAFITSSS 199
C +G+S +A I S+S
Sbjct: 686 RCVCFNGWSGVACDIRSNS 704
>L23645-8|AAK26133.1| 282|Caenorhabditis elegans Peroxisome
assembly factor protein19 protein.
Length = 282
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/80 (26%), Positives = 31/80 (38%)
Frame = +2
Query: 32 KNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELV 211
+ A KD +M + + E K + + P+ D E + A L E
Sbjct: 56 QKAAKDFQKMLEQMVTLQEEAMKKAGADPSEGEGEQPLD-PNDPEALAMMDALKQLMECS 114
Query: 212 MNAANAENPEAQLAAVQQCR 271
N ANA NPE +A + R
Sbjct: 115 SNVANASNPEEFMAGLDMLR 134
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
protein F36F2.3a protein.
Length = 1128
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 44 KDVDEMRR---RRNEVTVELRKNKREETLQKRRNVPISYSTDEEEID 175
+D D+ RR RR++V + R+ KREE ++ + S DE+EID
Sbjct: 585 RDRDDARRKDRRRDDVRKKERREKREEEDDDQKTKD-AESKDEDEID 630
>Z75547-11|CAA99905.4| 394|Caenorhabditis elegans Hypothetical
protein R11D1.10a protein.
Length = 394
Score = 27.9 bits (59), Expect = 8.0
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Frame = +2
Query: 44 KDVDEMRRRRNEVTVELRKNKREETLQKRR-----NVPISYSTDEEEIDKNLATTDLDEL 208
KD DE+ RR ++ + ++ RE+ R N S +T EE + N D ++
Sbjct: 218 KDWDELEARRRKIFEDEKEKNREDDASIRESMVSANTEFSEATKEEMNEINNILQDAEQR 277
Query: 209 VMNAANAENPE-AQLAAVQQCRKLLSCD 289
V E + A+L + + + S D
Sbjct: 278 VAETKKQEEHDAAELRTLMKSTRQKSLD 305
>M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical
protein B0303.3 protein.
Length = 448
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 611 SDIPIPFLRNVTWVIVNLCRSKDPPPPLKTIQEILPGL 724
SD+PI + RN ++ + ++KD P LK +I+ L
Sbjct: 141 SDVPIRYNRNARKAMLGMNKAKDVPSKLKIGGQIVKNL 178
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,031,884
Number of Sequences: 27780
Number of extensions: 401394
Number of successful extensions: 1463
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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