Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27b08
(281 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 99 5e-22
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 99 5e-22
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 67 4e-17
01_01_0502 - 3688940-3689149,3689180-3689251,3690028-3690064,369... 30 0.32
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 27 1.7
11_04_0350 - 16658497-16659015 27 3.0
01_05_0252 - 19959347-19959541,19960307-19960402,19961028-199611... 27 3.0
01_04_0061 + 15555096-15555428,15555768-15555775,15557117-15557495 27 3.0
01_06_0733 - 31563246-31563462,31563721-31563947,31563983-315640... 26 3.9
12_01_0407 - 3219980-3221278 26 5.2
09_02_0157 + 5083771-5083996,5084007-5084326,5085958-5086392,508... 26 5.2
05_05_0006 + 21450739-21451434 26 5.2
04_04_1214 - 31798271-31799134,31799218-31799301,31799469-317996... 26 5.2
11_06_0474 - 24037091-24037543,24037769-24037786 25 9.0
10_02_0141 + 5761931-5762020,5762170-5762201,5762453-5762604,576... 25 9.0
01_05_0420 + 21969797-21970939,21971307-21971369,21971488-219716... 25 9.0
01_02_0031 + 10364487-10365407 25 9.0
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 99.1 bits (236), Expect = 5e-22
Identities = 45/64 (70%), Positives = 52/64 (81%)
Frame = +1
Query: 1 FVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMK 180
FVF F+T+FGGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR K
Sbjct: 62 FVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAK 121
Query: 181 KVRG 192
K+RG
Sbjct: 122 KIRG 125
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 99.1 bits (236), Expect = 5e-22
Identities = 45/64 (70%), Positives = 52/64 (81%)
Frame = +1
Query: 1 FVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMK 180
FVF F+T+FGGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR K
Sbjct: 62 FVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAK 121
Query: 181 KVRG 192
K+RG
Sbjct: 122 KIRG 125
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 67.3 bits (157), Expect(2) = 4e-17
Identities = 29/38 (76%), Positives = 33/38 (86%)
Frame = +1
Query: 1 FVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLAR 114
FVF F+T+FGGGKSTGF LIYD LD AKK+EPK+RL R
Sbjct: 62 FVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
Score = 35.9 bits (79), Expect(2) = 4e-17
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +1
Query: 115 HGLYEKKRPTRKQRKERKNRMKKVRG 192
+GL K +RKQ KERKNR KK+RG
Sbjct: 128 NGLATKVEKSRKQMKERKNRAKKIRG 153
>01_01_0502 -
3688940-3689149,3689180-3689251,3690028-3690064,
3691224-3691705
Length = 266
Score = 29.9 bits (64), Expect = 0.32
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 45 WIRFDLRHTRSGQEVRAQAQVSPPRPVREEEAHA 146
W R +R + G E AQ+ PPRPV + +HA
Sbjct: 155 WSRL-VRTSEHGDEQLTGAQLRPPRPVEADASHA 187
>01_05_0740 - 24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 118 GLYEKKRPTRKQRKERKNRMKK 183
G+YE++R R+Q KER+ + K
Sbjct: 999 GVYERERNMRQQEKERRKQQSK 1020
>11_04_0350 - 16658497-16659015
Length = 172
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +1
Query: 127 EKKRPTRKQRKERKNRMKKVRGT 195
+KK+ +K++K++K + KKVR T
Sbjct: 36 KKKKKKKKKKKKKKKKKKKVRYT 58
>01_05_0252 -
19959347-19959541,19960307-19960402,19961028-19961132,
19961220-19961439,19961515-19961584,19961659-19962181,
19962621-19962672,19963644-19963867,19963955-19964022,
19965005-19965231,19965747-19965864,19965938-19966058
Length = 672
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 277 FFDFFVFYSLIPSIHITSWRP 215
FFDFF +L IH+ W P
Sbjct: 103 FFDFFEPPNLADKIHVEEWNP 123
>01_04_0061 + 15555096-15555428,15555768-15555775,15557117-15557495
Length = 239
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 22 NFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLY-EKKRPTRKQRKERKNR 174
NFGGG + L+Y L+ +++++ G Y +++ ERK +
Sbjct: 100 NFGGGAAVAVGLLYRVLE-ESSHNKRNKISESGAYTSSSNQEIEEKTERKEK 150
>01_06_0733 -
31563246-31563462,31563721-31563947,31563983-31564018,
31564750-31564862,31565872-31565950,31566739-31566956,
31567041-31567146,31568518-31568730
Length = 402
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 66 HTRSGQEVRAQAQVSPPRPVREEEAHAQTA*RT 164
H RSG++ R + ++SP P R+ + R+
Sbjct: 190 HQRSGEDFRQEHEISPVAPHRDVRVYVDNVVRS 222
>12_01_0407 - 3219980-3221278
Length = 432
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 139 ASSSRTGRGGLTCAWARTSWPDRVCR 62
A+ S++G+G AW R W D + +
Sbjct: 90 ATDSQSGKGKKGAAWQRMKWTDSMVK 115
>09_02_0157 +
5083771-5083996,5084007-5084326,5085958-5086392,
5087277-5087921
Length = 541
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 206 LDFLVPRTFFILFLRSLRCLRVGLFFSYRPW 114
++FL+ LFL +L +R G+FF + W
Sbjct: 461 VNFLMTTAVAQLFLATLCRMRAGIFFFFAAW 491
>05_05_0006 + 21450739-21451434
Length = 231
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 184 PSSFCSYVLYAVCAWASSSRTGRGGLTCAWARTSW 80
PSS S A A+ S+S TG T ++ SW
Sbjct: 69 PSSSASTTTTAAAAFTSTSTTGASATTVDSSKESW 103
>04_04_1214 -
31798271-31799134,31799218-31799301,31799469-31799614,
31799658-31799739
Length = 391
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 46 GFALIYDTLDLAKKFEPKHRL 108
GF L D L+ AK F+ KH+L
Sbjct: 129 GFVLGKDALERAKSFDEKHQL 149
>11_06_0474 - 24037091-24037543,24037769-24037786
Length = 156
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -2
Query: 193 YRGPSSFCSYVLYAVCAWASSSRTGRGGLTCAWARTSWPDRVCRRSKRIQLTCH 32
+ G + C + Y V +W S+S TC+ P+ V RR+ + L C+
Sbjct: 51 FLGDDNLCLFA-YGVPSWFSASSNIGAQHTCSMDDEDPPETVLRRANEM-LACN 102
>10_02_0141 +
5761931-5762020,5762170-5762201,5762453-5762604,
5763688-5763770,5764689-5764766,5764884-5764979,
5765076-5765345
Length = 266
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 118 GLYEKKRPTRKQRKERKNRMKKVRG 192
GL +++RP +RK R ++M + RG
Sbjct: 215 GLSQQQRPADAERKRRPSQMGRGRG 239
>01_05_0420 +
21969797-21970939,21971307-21971369,21971488-21971616,
21972241-21972291,21972669-21972809,21972922-21973122,
21973201-21973419,21973582-21973700,21973772-21973862,
21975864-21975965,21976291-21976315,21976522-21976592
Length = 784
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 52 ALIYD-TLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 189
A+ YD LD + P + +HG +KR ++RK +K + K+++
Sbjct: 363 AVSYDEVLDWNETPLPDDKALKHG-NTRKRTLTEERKAKKTKTKRIK 408
>01_02_0031 + 10364487-10365407
Length = 306
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 163 VLYAVCAWASSSRTGRGGLTCAWARTSWPD 74
++Y+ A +SSS TG G + A A PD
Sbjct: 249 LVYSAFASSSSSNTGGAGTSAAGAAAPGPD 278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,923,431
Number of Sequences: 37544
Number of extensions: 152653
Number of successful extensions: 511
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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