Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27b08
(281 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036706-2|ABD94090.1| 131|Caenorhabditis elegans Ribosomal pro... 99 4e-22
AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical ... 40 3e-04
Z83111-2|CAB05533.2| 331|Caenorhabditis elegans Hypothetical pr... 28 0.90
AL132876-23|CAD92403.1| 210|Caenorhabditis elegans Hypothetical... 28 0.90
AF039053-9|AAN84838.1| 131|Caenorhabditis elegans Hypothetical ... 28 0.90
AF039053-8|AAC25878.1| 178|Caenorhabditis elegans Hypothetical ... 28 0.90
AL032635-4|CAA21601.1| 140|Caenorhabditis elegans Hypothetical ... 27 1.6
AF125952-3|AAD14699.1| 475|Caenorhabditis elegans Hypothetical ... 27 1.6
AC006722-9|ABP57813.1| 475|Caenorhabditis elegans Hypothetical ... 27 1.6
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 27 2.1
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 27 2.1
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 27 2.1
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 2.1
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 27 2.1
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 27 2.1
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 27 2.1
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 2.1
U64841-1|AAB04845.2| 357|Caenorhabditis elegans Serpentine rece... 27 2.7
Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical pr... 26 3.6
U97006-5|AAC47967.1| 222|Caenorhabditis elegans Hypothetical pr... 26 3.6
U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone methyl... 26 3.6
U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone methyl... 26 3.6
Z68751-5|CAA92975.1| 468|Caenorhabditis elegans Hypothetical pr... 25 6.3
U88172-4|AAB42259.1| 224|Caenorhabditis elegans Hypothetical pr... 25 6.3
U80439-7|AAB37644.1| 344|Caenorhabditis elegans Hypothetical pr... 25 8.4
AC006631-5|AAF39790.3| 469|Caenorhabditis elegans Acetylcholine... 25 8.4
>AF036706-2|ABD94090.1| 131|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 24 protein.
Length = 131
Score = 99.1 bits (236), Expect = 4e-22
Identities = 46/64 (71%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Frame = +1
Query: 7 FGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKK 183
FGF++ GGGKS GFAL+YDT+D AKKFEPK+RL R GL K ++P RKQRKERKNR KK
Sbjct: 58 FGFESKIGGGKSKGFALVYDTIDFAKKFEPKYRLVRMGLATKVEKPGRKQRKERKNRQKK 117
Query: 184 VRGT 195
VRGT
Sbjct: 118 VRGT 121
>AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical
protein T07A9.14 protein.
Length = 204
Score = 39.9 bits (89), Expect = 3e-04
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +1
Query: 46 GFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNR 174
GF L+YDT D A K++P+H + H R + +RKE++ R
Sbjct: 54 GFTLVYDTFDFANKYQPEHS-SNHDGASTSRTSISRRKEKRRR 95
>Z83111-2|CAB05533.2| 331|Caenorhabditis elegans Hypothetical
protein F57G8.3 protein.
Length = 331
Score = 28.3 bits (60), Expect = 0.90
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = -3
Query: 276 FLIFLCFIHLYLAFTSLLGGRTYFRFLGTADL-LHSV---LTFFTLFARGPLLLVQAVAG 109
F F +HL+ A+ + + + T+ L LH V + FFT F P+L++ AG
Sbjct: 22 FTAFEVPVHLFGAYIIIFKTPDKMKSVRTSMLSLHLVGAFVDFFTSFLTAPVLILPVCAG 81
Query: 108 *PVLGLELLG 79
P+ L +LG
Sbjct: 82 YPLGVLGMLG 91
>AL132876-23|CAD92403.1| 210|Caenorhabditis elegans Hypothetical
protein Y105E8A.28 protein.
Length = 210
Score = 28.3 bits (60), Expect = 0.90
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 66 HTRSGQEVRAQAQVSPPRPVREEEAHAQTA*RT*EQNEEGP 188
H R+ + R + V PP+ E E A A EQN GP
Sbjct: 26 HLRNEELHRFRQAVPPPQQAEEAEEEADVAENVVEQNRLGP 66
>AF039053-9|AAN84838.1| 131|Caenorhabditis elegans Hypothetical
protein C45H4.14b protein.
Length = 131
Score = 28.3 bits (60), Expect = 0.90
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 58 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 183
I LD KK E KHR A+ +K+ ++Q K+ K +KK
Sbjct: 17 ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 57
>AF039053-8|AAC25878.1| 178|Caenorhabditis elegans Hypothetical
protein C45H4.14a protein.
Length = 178
Score = 28.3 bits (60), Expect = 0.90
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 58 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 183
I LD KK E KHR A+ +K+ ++Q K+ K +KK
Sbjct: 64 ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 104
>AL032635-4|CAA21601.1| 140|Caenorhabditis elegans Hypothetical
protein Y51A2A.6 protein.
Length = 140
Score = 27.5 bits (58), Expect = 1.6
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = +1
Query: 13 FKTNFGGGKSTGFALI----YDTLDLAKKFEPKHRLARHGLYEKKRPTRKQR 156
F N GGGK+ GF+ + + KK H HG + RPTR R
Sbjct: 21 FVKNNGGGKNHGFSSASSSSSSSSEEGKKHGHGHHHHNHGRPSRPRPTRPPR 72
>AF125952-3|AAD14699.1| 475|Caenorhabditis elegans Hypothetical
protein C01B4.7 protein.
Length = 475
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 280 FFFDFFVFYSLIPSIH 233
F+F FF+FY+ IP IH
Sbjct: 223 FYFVFFMFYTDIPGIH 238
>AC006722-9|ABP57813.1| 475|Caenorhabditis elegans Hypothetical
protein Y19D10A.4 protein.
Length = 475
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 280 FFFDFFVFYSLIPSIH 233
F+F FF+FY+ IP IH
Sbjct: 223 FYFVFFMFYTDIPGIH 238
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 127 EKKRPTRKQRKERKNRMKKVR 189
E+KR +K+R ERK +KVR
Sbjct: 820 ERKREKKKERDERKKEKEKVR 840
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
F07A11.6c protein.
Length = 2392
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 127 EKKRPTRKQRKERKNRMKKVR 189
E+KR +K+R ERK +KVR
Sbjct: 1111 ERKREKKKERDERKKEKEKVR 1131
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
F07A11.6b protein.
Length = 2407
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 127 EKKRPTRKQRKERKNRMKKVR 189
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 127 EKKRPTRKQRKERKNRMKKVR 189
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 127 EKKRPTRKQRKERKNRMKKVR 189
E+KR +K+R ERK +KVR
Sbjct: 820 ERKREKKKERDERKKEKEKVR 840
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 127 EKKRPTRKQRKERKNRMKKVR 189
E+KR +K+R ERK +KVR
Sbjct: 1111 ERKREKKKERDERKKEKEKVR 1131
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 127 EKKRPTRKQRKERKNRMKKVR 189
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 127 EKKRPTRKQRKERKNRMKKVR 189
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>U64841-1|AAB04845.2| 357|Caenorhabditis elegans Serpentine
receptor, class t protein13 protein.
Length = 357
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 181 SSFCSYVLYAVCAWASSSRTGRGGLTC 101
+SFC+Y L+ CA + + GG C
Sbjct: 99 ASFCNYPLFVFCAGSIGLGSWMGGCVC 125
>Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical
protein T18D3.1 protein.
Length = 523
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 82 KKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 189
KK E + A EKK R++RKE+++ +K R
Sbjct: 470 KKHETEEERAERKRKEKKEKERQERKEKEHDEQKKR 505
>U97006-5|AAC47967.1| 222|Caenorhabditis elegans Hypothetical
protein C13F10.7 protein.
Length = 222
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 76 LAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 189
L K+ + + +L + EKK+ + ++KERK K+ R
Sbjct: 125 LEKQRKKEKKLKKKAKKEKKKAKKLEKKERKKERKEKR 162
>U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform b protein.
Length = 1590
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 63 RHTRSGQEVRAQAQVSPPRPVREEEAHAQTA*RT*EQNEEGPRYQE 200
RH R +E+R Q Q R ++EE Q +Q E+ + +E
Sbjct: 544 RHDREREEMRLQKQKDEERRKKDEEERIQKENDEKKQKEDEAKMEE 589
>U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform a protein.
Length = 1604
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 63 RHTRSGQEVRAQAQVSPPRPVREEEAHAQTA*RT*EQNEEGPRYQE 200
RH R +E+R Q Q R ++EE Q +Q E+ + +E
Sbjct: 558 RHDREREEMRLQKQKDEERRKKDEEERIQKENDEKKQKEDEAKMEE 603
>Z68751-5|CAA92975.1| 468|Caenorhabditis elegans Hypothetical
protein T05E11.5 protein.
Length = 468
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 233 HHFLEAAPTLDFLVPRTFFILFL 165
HHF A P L +LVP F+ L
Sbjct: 410 HHFKAAQPALLYLVPCCLFVPLL 432
>U88172-4|AAB42259.1| 224|Caenorhabditis elegans Hypothetical
protein ZK354.7 protein.
Length = 224
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 79 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 183
AKK E K EKK ++++KE KN K
Sbjct: 168 AKKEEKKEEKKEEKKEEKKEEKKEEKKEEKNDENK 202
>U80439-7|AAB37644.1| 344|Caenorhabditis elegans Hypothetical
protein C01G8.6 protein.
Length = 344
Score = 25.0 bits (52), Expect = 8.4
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Frame = -1
Query: 137 LFFSYRPWRANLCLGS---NFLARSSVS*IKANPVDLPPPKFVLKPN 6
LF + P R N GS A SV+ NP PPP V K N
Sbjct: 254 LFHPFPPSRCNSSNGSYASTVTASPSVASYSPNPSQPPPPVAVAKLN 300
>AC006631-5|AAF39790.3| 469|Caenorhabditis elegans Acetylcholine
receptor protein 21 protein.
Length = 469
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 49 FALIYDTLDLAKKFEPKHRLARH--GLYEKKRPT 144
FA Y + L + EP H +A H +Y+K+ PT
Sbjct: 311 FAFRYLSKILFVRIEPYHSIAHHVRYMYQKEHPT 344
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,513,263
Number of Sequences: 27780
Number of extensions: 124288
Number of successful extensions: 513
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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