Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27b08
         (281 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   1.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   2.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   5.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   5.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   6.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   6.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    19   8.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    19   8.8  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 16  KTNFGGGKSTGFALIYDTLDLA 81
           KTN  G  S+G  L+ +  D+A
Sbjct: 724 KTNLSGDSSSGTTLLLELDDIA 745


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 109 LTCAWARTSWPDRVCRRSKRIQLTCHLRS 23
           L  ++ R   P  +C    R  LT H RS
Sbjct: 107 LKFSYPRMRAPSFICENETRQGLTLHYRS 135


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 128 RRRGPRANSVKNV 166
           RRR PR NSV  +
Sbjct: 411 RRRTPRYNSVSKI 423


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 253 SLIPSIHITSWRPHLL*ISW 194
           SL+ ++ ITS +   L ISW
Sbjct: 420 SLVSNVRITSVKSSELSISW 439


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 256 YSLIPSIHITSWRPHLL 206
           Y+L+ +I I S RP+LL
Sbjct: 476 YALLTAIVIFSERPNLL 492


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 139 PTRKQRKERKN 171
           PTR+ RK R+N
Sbjct: 262 PTRRLRKRRQN 272


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 93  LELLGQIECVVDQSESS*LATSEVCLET 10
           LE   ++EC ++Q  +   A S +C  T
Sbjct: 211 LEAEKRVECKMEQQGNYENAVSHICNAT 238


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 93  LELLGQIECVVDQSESS*LATSEVCLET 10
           LE   ++EC ++Q  +   A S +C  T
Sbjct: 211 LEAEKRVECKMEQQGNYENAVSHICNAT 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,568
Number of Sequences: 438
Number of extensions: 1750
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5494764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)