Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27b06
(708 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036706-10|AAM97948.1| 633|Caenorhabditis elegans Hypothetical... 346 1e-95
AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical ... 346 1e-95
AF036706-11|AAO91698.1| 53|Caenorhabditis elegans Hypothetical... 54 8e-08
Z93385-2|CAB07637.1| 358|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z92773-1|CAB07131.1| 395|Caenorhabditis elegans Hypothetical pr... 36 0.038
L14745-12|AAR25659.1| 366|Caenorhabditis elegans Hypothetical p... 33 0.20
U13875-6|AAK67213.1| 390|Caenorhabditis elegans Hypothetical pr... 31 1.1
AL132853-3|CAB60438.1| 859|Caenorhabditis elegans Hypothetical ... 31 1.1
Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical pr... 30 1.4
AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical ... 30 1.4
AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical ... 30 1.4
AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical ... 30 1.4
Z81134-8|CAB57908.1| 366|Caenorhabditis elegans Hypothetical pr... 30 1.9
AL117202-33|CAB55097.1| 366|Caenorhabditis elegans Hypothetical... 30 1.9
AL021571-4|CAI79270.1| 610|Caenorhabditis elegans Hypothetical ... 29 2.5
AL021571-2|CAA16514.2| 592|Caenorhabditis elegans Hypothetical ... 29 2.5
AL021571-1|CAA16512.2| 651|Caenorhabditis elegans Hypothetical ... 29 2.5
Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z93375-3|CAB07565.3| 443|Caenorhabditis elegans Hypothetical pr... 27 9.9
AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical ... 27 9.9
>AF036706-10|AAM97948.1| 633|Caenorhabditis elegans Hypothetical
protein T07A9.9b protein.
Length = 633
Score = 346 bits (850), Expect = 1e-95
Identities = 149/208 (71%), Positives = 183/208 (87%)
Frame = +3
Query: 81 SLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDR 260
S+YNFK+I VP A++ D++LSKTQRKTPTVVH+ Y I RIR FY RK+K+ QQ HD+
Sbjct: 3 SMYNFKRITCVPNAQELKDVVLSKTQRKTPTVVHRQYSIGRIRAFYARKIKFLQQTLHDK 62
Query: 261 LSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGD 440
L++II EFPK++++HPFY+DLMN+LYD+DHYK+ LGQ+NTARHLID +A++YVRL+KY D
Sbjct: 63 LTQIITEFPKMEEIHPFYSDLMNILYDRDHYKIALGQMNTARHLIDGIAREYVRLMKYAD 122
Query: 441 SLYRCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVGK 620
SLYRCK LKRAALGRM ++KRQ ++ YLEQVRQHL+RLPSIDP TRT+I+CGFPNVGK
Sbjct: 123 SLYRCKMLKRAALGRMVKLLKRQKSSFEYLEQVRQHLSRLPSIDPATRTLILCGFPNVGK 182
Query: 621 SSFINKITRADVEVQPYAFTTKSLYVGH 704
SSFIN +TRADVEVQPYAFTTK+LYVGH
Sbjct: 183 SSFINNVTRADVEVQPYAFTTKALYVGH 210
>AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical
protein T07A9.9a protein.
Length = 681
Score = 346 bits (850), Expect = 1e-95
Identities = 149/208 (71%), Positives = 183/208 (87%)
Frame = +3
Query: 81 SLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDR 260
S+YNFK+I VP A++ D++LSKTQRKTPTVVH+ Y I RIR FY RK+K+ QQ HD+
Sbjct: 3 SMYNFKRITCVPNAQELKDVVLSKTQRKTPTVVHRQYSIGRIRAFYARKIKFLQQTLHDK 62
Query: 261 LSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGD 440
L++II EFPK++++HPFY+DLMN+LYD+DHYK+ LGQ+NTARHLID +A++YVRL+KY D
Sbjct: 63 LTQIITEFPKMEEIHPFYSDLMNILYDRDHYKIALGQMNTARHLIDGIAREYVRLMKYAD 122
Query: 441 SLYRCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVGK 620
SLYRCK LKRAALGRM ++KRQ ++ YLEQVRQHL+RLPSIDP TRT+I+CGFPNVGK
Sbjct: 123 SLYRCKMLKRAALGRMVKLLKRQKSSFEYLEQVRQHLSRLPSIDPATRTLILCGFPNVGK 182
Query: 621 SSFINKITRADVEVQPYAFTTKSLYVGH 704
SSFIN +TRADVEVQPYAFTTK+LYVGH
Sbjct: 183 SSFINNVTRADVEVQPYAFTTKALYVGH 210
>AF036706-11|AAO91698.1| 53|Caenorhabditis elegans Hypothetical
protein T07A9.9c protein.
Length = 53
Score = 54.4 bits (125), Expect = 8e-08
Identities = 23/36 (63%), Positives = 29/36 (80%)
Frame = +3
Query: 426 LKYGDSLYRCKQLKRAALGRMATIMKRQGANLTYLE 533
+KY DSLYRCK LKRAALGRM ++KRQ ++ YL+
Sbjct: 1 MKYADSLYRCKMLKRAALGRMVKLLKRQKSSFEYLK 36
>Z93385-2|CAB07637.1| 358|Caenorhabditis elegans Hypothetical
protein M01E5.2 protein.
Length = 358
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +3
Query: 594 ICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVG 701
+ GFPN GKSS + I+RA +V Y FTT ++G
Sbjct: 193 LVGFPNAGKSSLLRAISRAKPKVASYPFTTLHPHIG 228
>Z92773-1|CAB07131.1| 395|Caenorhabditis elegans Hypothetical
protein W08E3.3 protein.
Length = 395
Score = 35.5 bits (78), Expect = 0.038
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 594 ICGFPNVGKSSFINKITRADVEVQPYAFTT 683
I G PNVGKS+F N +T+++ + + + F T
Sbjct: 26 ILGLPNVGKSTFFNVLTKSEAQAENFPFCT 55
>L14745-12|AAR25659.1| 366|Caenorhabditis elegans Hypothetical
protein C02F5.3 protein.
Length = 366
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 588 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVG 701
+ + GFP+VGKS+ ++ +T E Y FTT + G
Sbjct: 65 VAMVGFPSVGKSTLLSSMTSTHSEAAGYEFTTLTCIPG 102
>U13875-6|AAK67213.1| 390|Caenorhabditis elegans Hypothetical
protein C26E6.12 protein.
Length = 390
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 594 ICGFPNVGKSSFINK-ITRADVEVQPYAFTT 683
+ GFPN GKS+ + + V++ YAFTT
Sbjct: 166 LLGFPNAGKSTLLKALVPEKSVKIADYAFTT 196
>AL132853-3|CAB60438.1| 859|Caenorhabditis elegans Hypothetical
protein Y80D3A.7 protein.
Length = 859
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/92 (25%), Positives = 39/92 (42%)
Frame = +3
Query: 153 TQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPKLDDVHPFYADLMNV 332
T T + HK + + G + Q+F + R FP L + F +++ +
Sbjct: 124 TYPTTELLGHKILLANNLYGVETHPKTHRIQSFSAVILRFFLTFPNLKPMTDFEHEIVKL 183
Query: 333 LYDKDHYKLGLGQLNTARHLIDNVAKDYVRLL 428
+YD Y L GQ+ + DN+ + VR L
Sbjct: 184 VYDSGKYPLIYGQVAS-----DNLVAEEVRRL 210
>Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical
protein K01C8.9 protein.
Length = 556
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 594 ICGFPNVGKSSFINKITR 647
+ GFPNVGKSS IN + R
Sbjct: 264 VVGFPNVGKSSVINSLKR 281
>AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical
protein C53H9.2c protein.
Length = 247
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 546 HLARLPSIDPYTRTIIICGFPNVGKSSFINKI 641
H++ PS P ++ G+PNVGKSS INK+
Sbjct: 120 HVSDEPSAKPVMVGMV--GYPNVGKSSTINKL 149
>AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical
protein C53H9.2b protein.
Length = 385
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 546 HLARLPSIDPYTRTIIICGFPNVGKSSFINKI 641
H++ PS P ++ G+PNVGKSS INK+
Sbjct: 120 HVSDEPSAKPVMVGMV--GYPNVGKSSTINKL 149
>AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical
protein C53H9.2a protein.
Length = 554
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 546 HLARLPSIDPYTRTIIICGFPNVGKSSFINKI 641
H++ PS P ++ G+PNVGKSS INK+
Sbjct: 289 HVSDEPSAKPVMVGMV--GYPNVGKSSTINKL 318
>Z81134-8|CAB57908.1| 366|Caenorhabditis elegans Hypothetical
protein T28D6.6 protein.
Length = 366
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 600 GFPNVGKSSFINKITRADVEVQPYAFTTKSLYVG 701
GFP+VGKS+ + + EV Y FTT + G
Sbjct: 69 GFPSVGKSTLLCNLAGVFSEVAAYEFTTLTTVPG 102
>AL117202-33|CAB55097.1| 366|Caenorhabditis elegans Hypothetical
protein T28D6.6 protein.
Length = 366
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 600 GFPNVGKSSFINKITRADVEVQPYAFTTKSLYVG 701
GFP+VGKS+ + + EV Y FTT + G
Sbjct: 69 GFPSVGKSTLLCNLAGVFSEVAAYEFTTLTTVPG 102
>AL021571-4|CAI79270.1| 610|Caenorhabditis elegans Hypothetical
protein T19A6.2c protein.
Length = 610
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 600 GFPNVGKSSFINKITRADV-EVQPYAFTTK 686
G+PNVGKSS +N + + V + P A TK
Sbjct: 332 GYPNVGKSSLVNTLRKKKVCKTAPIAGETK 361
>AL021571-2|CAA16514.2| 592|Caenorhabditis elegans Hypothetical
protein T19A6.2b protein.
Length = 592
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 600 GFPNVGKSSFINKITRADV-EVQPYAFTTK 686
G+PNVGKSS +N + + V + P A TK
Sbjct: 273 GYPNVGKSSLVNTLRKKKVCKTAPIAGETK 302
>AL021571-1|CAA16512.2| 651|Caenorhabditis elegans Hypothetical
protein T19A6.2a protein.
Length = 651
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 600 GFPNVGKSSFINKITRADV-EVQPYAFTTK 686
G+PNVGKSS +N + + V + P A TK
Sbjct: 332 GYPNVGKSSLVNTLRKKKVCKTAPIAGETK 361
>Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical
protein F47A4.5 protein.
Length = 1071
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 279 EFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDN 401
+FPK + Y D+++ D +H+ + G++ T HL+DN
Sbjct: 256 QFPKAELA---YYDIVSTDVDDEHFVIVAGKVTTDEHLMDN 293
>Z93375-3|CAB07565.3| 443|Caenorhabditis elegans Hypothetical
protein C38C6.5 protein.
Length = 443
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +2
Query: 200 KNTWVLY*KSEIYPAELPR---PTVQNYSGIPK 289
KN + Y +I A PR P + NYSGIPK
Sbjct: 196 KNLDIKYSSQQIMKAFTPRFFHPIIANYSGIPK 228
>AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical
protein Y67D2.4 protein.
Length = 313
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 591 IICGFPNVGKSSFINKI 641
++ G PNVGKSS IN I
Sbjct: 119 MVVGIPNVGKSSLINAI 135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,960,527
Number of Sequences: 27780
Number of extensions: 369213
Number of successful extensions: 933
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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