Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27b05
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t... 63 4e-11
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 32 0.094
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 27 2.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.5
SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom... 27 3.5
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 26 4.7
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 6.1
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 8.1
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 25 8.1
>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
translocase complex subunit Tim23|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 62.9 bits (146), Expect = 4e-11
Identities = 33/98 (33%), Positives = 57/98 (58%)
Frame = +2
Query: 275 GMSFMTGSGLGGMAGLYKGLRATTLAGQVGKVRRTQVVNYVMKQGTTTGCTLGIIASFYS 454
G S+++G +GG+ GL +G++ T ++R ++N V ++G G +LG++A Y+
Sbjct: 88 GTSYLSGLAIGGLWGLNEGMKKTKDITST-RLRLNGILNGVTRRGPFVGNSLGVLALVYN 146
Query: 455 CIALGVTWLRDKEDTANTFIAASTTGIIYKSTSGLRSM 568
I + + R K N+ A + TG +YKST GLR+M
Sbjct: 147 GINSLIGYKRQKHGWENSVAAGALTGALYKSTRGLRAM 184
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 31.9 bits (69), Expect = 0.094
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +2
Query: 29 SHVSSYSLVDLVLQIKNETKMSIF--GDILNKNEQKNNQASANL 154
S +S S D+V QIKN +K S+F G + KN N+ ++N+
Sbjct: 202 SQAASLSDSDMVQQIKNGSKTSLFKKGFLFKKNNAMQNRTTSNI 245
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 478 ASRQRRHSKHFHSSLNHWYHLQKHIWSSFNGSWCSYRSYISRDLHIT 618
A +Q+ +++ + LNH L ++ S+ N WC+ S I + LH T
Sbjct: 207 AHKQKFYNETLPTLLNHMQVLNEYRVSNLNEIWCNSFS-IEKSLHDT 252
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 363 PT*PARVVALSPLYNPAIPPKPEPVIKD 280
P+ A +L YNP PP P P ++D
Sbjct: 174 PSAAAPATSLPSDYNPPPPPPPPPAVED 201
>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 451
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/80 (21%), Positives = 30/80 (37%)
Frame = +2
Query: 269 IIGMSFMTGSGLGGMAGLYKGLRATTLAGQVGKVRRTQVVNYVMKQGTTTGCTLGIIASF 448
++ + M G G ++ + KG+ + K VVN + +T L + A+
Sbjct: 258 LVAVKVMRADGTGTVSDIIKGIEFAFKQSKKDKESIASVVNMSIGGDASTALDLAVNAAI 317
Query: 449 YSCIALGVTWLRDKEDTANT 508
+ V D ED T
Sbjct: 318 AGGLFFAVAAGNDAEDACGT 337
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +2
Query: 302 LGGMAGLYKGLRATTLAGQVGKVRRTQVVNYVMKQGTTTGCTLGIIASFYS 454
LG GL++ L +AG + K T+ ++Y +Q +G ++ +FY+
Sbjct: 557 LGSPLGLFQMLNGKKIAGPIPKTNLTRSLSY-SEQSFDSGVSILSCQNFYN 606
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 445 VLLMHSPWGNLASRQRRHSKHFHSSLN 525
+L +H PW A+ ++ +H+ SS N
Sbjct: 500 LLYLHRPWFVRAATRKEEREHYKSSFN 526
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 26 ISHVSSYSLVDLVLQIKNETKMSIFG 103
IS+ S S+VDL+L IK+ IFG
Sbjct: 1276 ISNNSKLSVVDLLLPIKDRLLSPIFG 1301
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 8.1
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +1
Query: 418 RLHT--WNYCIVLLMHSPWGNLASRQRRHSKHFHSSLNHWYHLQKHIWSSF--NGSWCSY 585
R+H+ W+ + L SPWG S H H S+ H + SF N SW
Sbjct: 143 RIHSVAWSPLVSLPSSSPWGVCLFALGAESGHVHLSI--MSHSSTPFFKSFDLNCSWVVQ 200
Query: 586 RSYIS 600
S+ S
Sbjct: 201 LSFSS 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,600
Number of Sequences: 5004
Number of extensions: 52058
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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