Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27a23
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 29 0.50
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 29 0.66
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe... 28 1.5
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 1.5
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 27 2.0
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 27 2.0
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 27 2.6
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos... 27 2.6
SPBC725.03 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.1
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 29.5 bits (63), Expect = 0.50
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +2
Query: 266 PSSAFETPALQREMERVQQRLPMEPLSMKRYELPPPPVGRMSEPSAWAES 415
PS + +P++ ++ V RLP P+S R ++P PP + PS+ A S
Sbjct: 1041 PSPSALSPSVTPQLPPVSSRLP--PVSATRPQIPQPPPVSTALPSSSAVS 1088
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 29.1 bits (62), Expect = 0.66
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 224 YRPTKNYLENAGPEPSSAFETPALQREMERVQQRLPMEPLSMKRYELPPPPV 379
++ K+ L+ G E E ALQ E V+ M PL +K EL P P+
Sbjct: 660 FKAVKHSLKRIGDEE---IENTALQTEKIHVRDAKTMPPLLLKLSELQPEPL 708
>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = -2
Query: 498 ASEPYSNCNSKLRTLIAWCDSCA*ELSTDSAQALGSLILPTGGGGSSYLFIDN 340
+ EP CNS +TL W E + A G + G GG+ F+ N
Sbjct: 361 SQEPDWKCNSLTKTLPNWKTRGIPEYCAQPSMAEGMIRCKPGAGGTIGFFVAN 413
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/57 (29%), Positives = 35/57 (61%)
Frame = +2
Query: 407 AESVDNSHAQLSHQAIRVLNLELQLEYGSEAWRSYLNTLQALVTRAQNEHNQLRKQI 577
+E ++N AQ +Q+ ++ LEL+ + AWR+ + +V ++ +HNQ+R+Q+
Sbjct: 1354 SEDLENERAQ--NQS-KIEQLELKNTKLAAAWRT---KYEQVVNKSLEKHNQIRQQL 1404
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 27.5 bits (58), Expect = 2.0
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = +2
Query: 245 LENAGPEPSSAFETPALQREMERVQQRLPMEPLSMKRYELPPPPVGRMSEPSAWAESVDN 424
LEN E ETP+ R+ +R P +P+ + P G +EP + S
Sbjct: 28 LENVMSEEDIEIETPSRNRKRVSTTRRTPSKPIRSQPL-TPSSSKGAGNEPKSQNSSTTR 86
Query: 425 SHAQLSHQAIRVLNLELQLEYGS 493
A+ Q+ + L +L YG+
Sbjct: 87 GSAK--KQSSKGLEEKLINSYGT 107
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +1
Query: 472 VAVRVRFRSMEIIPQYTSSISHKSSKRTQPVT*TNRLCELGT*TRTNSKRCEVAGIEATV 651
+ + F+ + P+ S + K + T+PV+ N +L T +R++S + ATV
Sbjct: 113 IKTKYEFKKWVLYPEIPSPETLKPEQNTRPVSEVNASLDLNTASRSSSAHSVKSTSSATV 172
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +2
Query: 191 ALAMVEEECRRYRPTKNYLENAGPEPSSAFETPALQREMERVQQRLPMEPLSMKRYEL 364
AL + + R K LE S +F+ L ++ R+ QRL ++ + YE+
Sbjct: 472 ALEQLVQSIRDSEKLKERLETEQQNMSGSFQATRLTAQLSRLDQRLDLDRSFVHCYEI 529
>SPCC338.07c |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 729
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 134 VDALPYIDQGYDDPGVREAALAMVE 208
+D + + D YDDP REAA +E
Sbjct: 547 LDLMSWEDSVYDDPSFREAAQGSIE 571
>SPBC725.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 257
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 113 KMAGEVVVDALPYIDQGYDDPGVREA 190
K G+V V LP G +DPGV EA
Sbjct: 183 KYQGDVKVSPLPSTLTGKEDPGVIEA 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,442
Number of Sequences: 5004
Number of extensions: 61639
Number of successful extensions: 232
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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