Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27a23
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13019-8|AAC24446.2|  238|Caenorhabditis elegans Hypothetical pr...   125   4e-29
Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U56966-10|AAA98722.1|  686|Caenorhabditis elegans Amyloid precur...    30   1.4  
U56966-9|AAK68242.1|  684|Caenorhabditis elegans Amyloid precurs...    30   1.4  
U00240-1|AAC46470.1|  680|Caenorhabditis elegans beta-amyloid pr...    30   1.4  
AY204183-1|AAO39187.1|  406|Caenorhabditis elegans nuclear recep...    30   1.9  
AL132948-14|CAD91709.1|  399|Caenorhabditis elegans Hypothetical...    30   1.9  
AL132948-13|CAD31815.2|  509|Caenorhabditis elegans Hypothetical...    30   1.9  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U40955-2|AAA81748.2|   89|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical...    29   3.3  
Z48783-4|CAA88698.1|  359|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical...    29   4.3  

>U13019-8|AAC24446.2|  238|Caenorhabditis elegans Hypothetical
           protein T12A2.7 protein.
          Length = 238

 Score =  125 bits (301), Expect = 4e-29
 Identities = 63/184 (34%), Positives = 104/184 (56%)
 Frame = +2

Query: 125 EVVVDALPYIDQGYDDPGVREAALAMVEEECRRYRPTKNYLENAGPEPSSAFETPALQRE 304
           +V+VDALPY+D  Y++   R+ A+ +VE EC+ +RPTKNYL +       AF T  + +E
Sbjct: 21  QVLVDALPYLDTEYNEAD-RQLAMKLVEHECKTFRPTKNYLTHLPVPDYDAFLTKCMLKE 79

Query: 305 MERVQQRLPMEPLSMKRYELPPPPVGRMSEPSAWAESVDNSHAQLSHQAIRVLNLELQLE 484
           M+R++++  M  L M R ELP P   +  +   WA+ + N+ AQ  H  +R +NLEL  E
Sbjct: 80  MDRMKKKEEMGKLDMSRCELPAPSAVKGVDRKLWAKVLRNAKAQNEHLLMRQINLELMDE 139

Query: 485 YGSEAWRSYLNTLQALVTRAQNEHNQLRKQIGSVNWERKRVQTASGXXXXXXXXXWAQLV 664
           Y +E++      ++ L+T A+ E  + ++ +  V+  RK  Q  +G         W  +V
Sbjct: 140 YAAESYLQRNKVMEDLLTHAEKELRKTKEAVMEVHANRKMAQLKAGEKVKQLEQSWVSMV 199

Query: 665 SDNY 676
           ++NY
Sbjct: 200 TNNY 203


>Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical
           protein C33B4.3b protein.
          Length = 993

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 248 ENAGPEPSSAFETPALQRE--MERVQQRLPMEPLSMKRYELPPPPV 379
           E   P P+S + +P LQR+  M+R +   P  P S  +   PPPP+
Sbjct: 686 EMPAPPPAS-YISPDLQRDSSMQRSEYSRPFRPTSRPKTPPPPPPM 730


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
           protein C33B4.3a protein.
          Length = 1110

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 248 ENAGPEPSSAFETPALQRE--MERVQQRLPMEPLSMKRYELPPPPV 379
           E   P P+S + +P LQR+  M+R +   P  P S  +   PPPP+
Sbjct: 686 EMPAPPPAS-YISPDLQRDSSMQRSEYSRPFRPTSRPKTPPPPPPM 730


>U56966-10|AAA98722.1|  686|Caenorhabditis elegans Amyloid
           precursor-like protein1, isoform a protein.
          Length = 686

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +2

Query: 488 GSEAWRSYLNT-LQALVTRAQNEHNQLRKQIGSVNWER 598
           G+E ++S +N   Q  V+  + EH ++RK+I +V+ ER
Sbjct: 296 GAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAVHEER 333


>U56966-9|AAK68242.1|  684|Caenorhabditis elegans Amyloid
           precursor-like protein1, isoform b protein.
          Length = 684

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +2

Query: 488 GSEAWRSYLNT-LQALVTRAQNEHNQLRKQIGSVNWER 598
           G+E ++S +N   Q  V+  + EH ++RK+I +V+ ER
Sbjct: 296 GAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAVHEER 333


>U00240-1|AAC46470.1|  680|Caenorhabditis elegans beta-amyloid
           protein precursor protein.
          Length = 680

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +2

Query: 488 GSEAWRSYLNT-LQALVTRAQNEHNQLRKQIGSVNWER 598
           G+E ++S +N   Q  V+  + EH ++RK+I +V+ ER
Sbjct: 290 GAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAVHEER 327


>AY204183-1|AAO39187.1|  406|Caenorhabditis elegans nuclear receptor
           NHR-95 protein.
          Length = 406

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 118 GRRSCRRCITIYRPRI*RSWSKRSCIGHGGRRVQTL 225
           G  SCR C   +R  +   WS+  C+G    ++  L
Sbjct: 35  GVNSCRACAAFFRRTVNSKWSRMRCLGGSCNQISFL 70


>AL132948-14|CAD91709.1|  399|Caenorhabditis elegans Hypothetical
           protein Y39B6A.17b protein.
          Length = 399

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 118 GRRSCRRCITIYRPRI*RSWSKRSCIGHGGRRVQTL 225
           G  SCR C   +R  +   WS+  C+G    ++  L
Sbjct: 28  GVNSCRACAAFFRRTVNSKWSRMRCLGGSCNQISFL 63


>AL132948-13|CAD31815.2|  509|Caenorhabditis elegans Hypothetical
           protein Y39B6A.17a protein.
          Length = 509

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 118 GRRSCRRCITIYRPRI*RSWSKRSCIGHGGRRVQTL 225
           G  SCR C   +R  +   WS+  C+G    ++  L
Sbjct: 28  GVNSCRACAAFFRRTVNSKWSRMRCLGGSCNQISFL 63


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/80 (23%), Positives = 33/80 (41%)
 Frame = +2

Query: 164 YDDPGVREAALAMVEEECRRYRPTKNYLENAGPEPSSAFETPALQREMERVQQRLPMEPL 343
           +++  +R+ A+A V    +   P +         PS++   P  +R     Q + P    
Sbjct: 280 HEEAELRQKAIASVAARAKSGSPRRRR------SPSASKSPPPARRRRSPSQSKSPAPKR 333

Query: 344 SMKRYELPPPPVGRMSEPSA 403
           +  R + PP P  R   PSA
Sbjct: 334 AKSRSKSPPAPARRRRSPSA 353


>U40955-2|AAA81748.2|   89|Caenorhabditis elegans Hypothetical
           protein F48B9.4 protein.
          Length = 89

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 198 ANAASLTPGSSYPWSIYGNASTTTSPAIFYKIYNS 94
           AN    TP S      YGN+    +P + Y+ YNS
Sbjct: 22  ANVVDATPRSQGNMMRYGNSLPAYAPHVLYRFYNS 56


>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.17 protein.
          Length = 1232

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 281 ETPALQREMERVQQRLP-MEPLSMKRYELPPPPVGRMSE 394
           E   L+ E+E  QQ +P ++P +  R  +PPPPV R+ E
Sbjct: 774 EAEELKAELESRQQPIPPVDPNA--RLLVPPPPVARLEE 810


>Z48783-4|CAA88698.1|  359|Caenorhabditis elegans Hypothetical
           protein F33H1.3 protein.
          Length = 359

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +2

Query: 245 LENAGPEPSSAFETPALQREMERVQQRLPMEPLSMKRYELPPPPVG---RMSEPSAWAES 415
           +  AGPE ++    PA+ +   +V+ +LP  P+ +   + P PP G     S+     E 
Sbjct: 145 VSTAGPERNNQLLAPAMIKR--KVEFQLPPRPVRVAGQKPPGPPCGLAPNFSDSEEEEEE 202

Query: 416 VDNSH 430
           V + H
Sbjct: 203 VHDDH 207


>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
            protein F15E6.1 protein.
          Length = 1655

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 23/90 (25%), Positives = 38/90 (42%)
 Frame = +2

Query: 182  REAALAMVEEECRRYRPTKNYLENAGPEPSSAFETPALQREMERVQQRLPMEPLSMKRYE 361
            REA    VE+E + +R         GP P S     A+++ +E+V+++ P  P      +
Sbjct: 1416 REAKKKAVEKEKKEHRKEPKKTNEPGPAPKS---EKAVEKAVEKVEKK-PKSP------Q 1465

Query: 362  LPPPPVGRMSEPSAWAESVDNSHAQLSHQA 451
             PP      + P    E VD    + S  +
Sbjct: 1466 KPPAKPTAQNPPLKKTEEVDGIEREASESS 1495


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,618,509
Number of Sequences: 27780
Number of extensions: 366188
Number of successful extensions: 1422
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)