Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27a23
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    24   1.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.9  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   8.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   8.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   8.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.7  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
 Frame = -2

Query: 642 LNARNLAPLAVCTRLRSQFTEPICLRNW----LCSF*ALVTNA*SVLRYDLHASEPYSNC 475
           L AR L     C  L +  TEP  LRN+     C++ AL  ++  V+   +  S   S+ 
Sbjct: 184 LFARFLKNPRPCNVLATSLTEPYTLRNYGRRINCTYVALYPSSVQVIALGVGVSNFLSST 243

Query: 474 NSKLRTLIAWCD 439
            +     I  CD
Sbjct: 244 RTAETGTIRKCD 255


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 329 PMEPLSMKRYELPPPPVGRMSEPSAWAESVDNSHAQLSHQAI 454
           P + +  + Y +P      MSE    ++SV+   +Q  HQ +
Sbjct: 773 PFKGMETQDYRIPEVMRRLMSEDKRLSKSVNGDQSQPPHQQL 814


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 287 PALQREMERVQQRLPMEPLSMKRYELPPPPVGRMSEPSA 403
           P L+RE E   +     P+ + +   P P + R +EP A
Sbjct: 85  PRLRREAELEAEPGNNRPVYISQPRPPHPRLRREAEPEA 123



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 287 PALQREMERVQQRLPMEPLSMKRYELPPPPVGRMSEPSA 403
           P L+RE E   +     P+ + +   P P + R +EP A
Sbjct: 141 PRLRREAELEAEPGNNRPVYISQPRPPHPRLRREAEPEA 179


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 394 TKCLGRVS*QLSCTAVTPSYQSSQFRVAVRVRFRSMEII 510
           T  + R+    S TAV P Y S   +V +     +++I+
Sbjct: 602 TNRIARIFDSASRTAVRPRYISPASQVCIAAALIALQIV 640


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 282 KLLLYNERWKECNRDCRWNHCL*RGMNFHPLQSE 383
           K  + ++R +   + CR+  CL  GM    +Q E
Sbjct: 150 KSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEE 183


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 282 KLLLYNERWKECNRDCRWNHCL*RGMNFHPLQSE 383
           K  + ++R +   + CR+  CL  GM    +Q E
Sbjct: 150 KSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEE 183


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 394 TKCLGRVS*QLSCTAVTPSYQSSQFRVAVRVRFRSMEII 510
           T  + R+    S TAV P Y S   +V +     +++I+
Sbjct: 692 TNRIARIFDSASRTAVRPRYISPASQVCIAAALIALQIV 730


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,466
Number of Sequences: 438
Number of extensions: 4365
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)