Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27a22
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...   126   3e-30
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    26   5.2  
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    25   9.0  
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|...    25   9.0  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    25   9.0  

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score =  126 bits (303), Expect = 3e-30
 Identities = 66/171 (38%), Positives = 99/171 (57%), Gaps = 1/171 (0%)
 Frame = +2

Query: 113 MVASKFQPTYARQAFPCFDEPDFKATYDIALVKPEGYVALSNMNEISVTRDPSSDLETVK 292
           +  ++ +PT AR+AFPC+DEP  KAT+ I +   E Y  LSNMN +  T      L+T +
Sbjct: 138 LATTQMEPTSARRAFPCWDEPALKATFTIDITAKENYTILSNMNAVEET--VKDGLKTAR 195

Query: 293 FATSVPMSTYLACFVVCDFGYKDVEINTSGIG-NTFKLRSFAQKNELHKIDFAQDIGKRA 469
           FA +  MSTYL  ++V +  Y  VE  T G       +R +       +  FA ++G + 
Sbjct: 196 FAETCRMSTYLLAWIVAELEY--VEYFTPGKHCPRLPVRVYTTPGFSEQGKFAAELGAKT 253

Query: 470 TEFYIRYYEVEFPLPKLDMIAIPDYISGATEHWGLITYRETSFLVDEATAS 622
            +F+   +   +PLPK DM+AIPD+ +GA E+WGL+TYR  + LV E +A+
Sbjct: 254 LDFFSGVFGEPYPLPKCDMVAIPDFEAGAMENWGLVTYRLAAILVSEDSAA 304


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 378 EVLISTSLYPKSHTTKQARYVDIGTLVANLTVSKSD 271
           E+++S    P     K+  +VD+G ++ANL   ++D
Sbjct: 381 ELVVSNK--PPLEERKKQDFVDLGVVIANLATGRTD 414


>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -2

Query: 478 KFSSSLPNVLSKINLMK-FIFLSKRSKFESISDTRSINFNILISKITYNKTSQICRHWDT 302
           K + S+  +L + +L K +I + K +K E +     + FN  I      + S    HW  
Sbjct: 215 KLNISVAQLLIRWSLQKGYIPIIKSTKKEHMLSDLDV-FNFTIPDDVVQELSSFDEHWHA 273

Query: 301 GRKFD 287
           G  +D
Sbjct: 274 GTTYD 278


>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 368 INTSGIGNTFKLRSFAQKNELHKIDFAQDIGKRATEFYIRYYEVEFPLPK 517
           ++T+G G+ F     A  ++   ID+A  +G    +  I+      PLPK
Sbjct: 285 VDTNGAGDAFAGGFIAALSQGQGIDYAVTLGHWLGQECIKVSGTTLPLPK 334


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 318 HIWLVLLYVILDIRMLKLILLVSEILS 398
           H W+VLL  I+ I + K ++ ++ + S
Sbjct: 74  HFWVVLLVTIVQIGVYKEVIAIASVPS 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,459
Number of Sequences: 5004
Number of extensions: 59182
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)