Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27a22
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.80 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.80 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.80 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.1  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.1  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.1  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    24   1.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   4.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.7  

>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
 Frame = -2

Query: 154 CLASICWLKFTGYHCSLK--*WEFTKNQ 77
           C   I W  F   HC +K   W +  NQ
Sbjct: 111 CKIDIAWFPFDDQHCDMKFGSWTYDGNQ 138


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
 Frame = -2

Query: 154 CLASICWLKFTGYHCSLK--*WEFTKNQ 77
           C   I W  F   HC +K   W +  NQ
Sbjct: 111 CKIDIAWFPFDDQHCDMKFGSWTYDGNQ 138


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
 Frame = -2

Query: 154 CLASICWLKFTGYHCSLK--*WEFTKNQ 77
           C   I W  F   HC +K   W +  NQ
Sbjct: 111 CKMDIAWFPFDDQHCDMKFGSWTYDGNQ 138


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
 Frame = -2

Query: 154 CLASICWLKFTGYHCSLK--*WEFTKNQ 77
           C   + W  F   HC +K   W +  NQ
Sbjct: 111 CKMDVAWFPFDDQHCDMKFGSWTYDGNQ 138


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
 Frame = -2

Query: 154 CLASICWLKFTGYHCSLK--*WEFTKNQ 77
           C   I W  F   HC +K   W +  NQ
Sbjct: 111 CKIDITWFPFDDQHCDMKFGSWTYDGNQ 138


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
 Frame = -2

Query: 154 CLASICWLKFTGYHCSLK--*WEFTKNQ 77
           C   I W  F   HC +K   W +  NQ
Sbjct: 111 CKIDITWFPFDDQHCDMKFGSWTYDGNQ 138


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
 Frame = -2

Query: 154 CLASICWLKFTGYHCSLK--*WEFTKNQ 77
           C   I W  F   HC +K   W +  NQ
Sbjct: 179 CKIDITWFPFDDQHCDMKFGSWTYDGNQ 206


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
 Frame = -2

Query: 154 CLASICWLKFTGYHCSLK--*WEFTKNQ 77
           C   I W  F   HC +K   W +  NQ
Sbjct: 179 CKIDITWFPFDDQHCDMKFGSWTYDGNQ 206


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 234 DNATYPSGLTSAISYVALKSGSSKQGN 154
           D+ T P G   +I+YVA ++G   QG+
Sbjct: 75  DSYTAPDGQQVSITYVADENGFQVQGS 101


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 361 ILISKITYNKTSQICRHWDTGRK 293
           +L + +  N  S    HWD+GR+
Sbjct: 253 MLTATVNRNHLSGGTNHWDSGRR 275


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 320 MSTLGHWSQI*QFLNQMM 267
           M  +GHWS   QFL  M+
Sbjct: 286 MLLIGHWSGCLQFLVPML 303


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 320 MSTLGHWSQI*QFLNQMM 267
           M  +GHWS   QFL  M+
Sbjct: 254 MLLIGHWSGCLQFLVPML 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,826
Number of Sequences: 438
Number of extensions: 3922
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)