Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27a19
         (279 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    28   0.21 
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    27   0.49 
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   2.0  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   2.6  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    24   3.5  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    24   3.5  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    24   4.6  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    24   4.6  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    23   6.1  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    23   6.1  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    23   6.1  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    23   6.1  
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    23   8.0  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 28.3 bits (60), Expect = 0.21
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -3

Query: 175  LAAYANSTNSSSFLQTVDYLFP--HGCLSYISWYCVICCNLSTLCFSLKSGEI 23
            L  Y     +   +Q  D++    H CL  + W   I  +L + CFSLK+ EI
Sbjct: 965  LFPYLEPQEAELVIQIFDFISSDTHKCLQGLKW--AIPTSLDSACFSLKAKEI 1015


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 27.1 bits (57), Expect = 0.49
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 115 FPHGCLSYISWYCVICCNLSTLCFSLKSGEIAGQVLR 5
           FP   + Y+  YC  C NL T   S+  G++  Q+ R
Sbjct: 589 FPESLIPYLPVYCDACLNLGTHSESI--GDLEHQIRR 623


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -2

Query: 242 SIVIYNNFEICISNMWKYRFKIPSCIC*FHQQFILLADCRLFIPPWLFKLYILVL 78
           S ++ NNFE+CI    K   +    +    +   LL+D  L+ P + +K  I VL
Sbjct: 163 STLLPNNFELCIDVFQKCTTQCQRELI-IKKACYLLSDVSLYGPRFAYKYIIEVL 216


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 153 PTVHPSCRLSTIYSPMV 103
           PT+HP+ RL+TI   +V
Sbjct: 410 PTIHPATRLNTIQRAVV 426


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 112 PHGCLSYISWYCVICCNLSTLCFSLKSGEIAGQV 11
           PH       WY  I  +L  +C +  S  IAG +
Sbjct: 92  PHNWSRLWKWYITIVNSLLVVCSAFGSSVIAGDL 125


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 136 LQTVDYLFPHGCLSYISW 83
           L+  DY++PHG  + + W
Sbjct: 172 LKQADYIYPHGLTTPMHW 189


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 55  YSNYNKLHSTRIYNLNNH 108
           Y+ +N L STR+  + NH
Sbjct: 193 YTGHNSLASTRVTGITNH 210


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 22  LFHHFSMKSRVYSNYNKLHSTRIYNLNNHGGI 117
           L H FS   +  S  +   ST  YN+N   GI
Sbjct: 141 LSHGFSTPQKAISAVSTYFSTMPYNVNKETGI 172


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 184  LKFLAAYANSTNSSSFLQTVDYLFPHGCLSYI 89
            LK   AY +   SS+    V YL+ HG +  +
Sbjct: 1648 LKHGIAYISEITSSNDQNIVQYLYRHGLIKVL 1679


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 164 C*FHQQFILLAD-CRLFIPPWLFKLYILVLCNLL*FEYTL 48
           C   Q + L +  C  +IP +  K+   +L +L  FEY L
Sbjct: 315 CTEEQAYFLFSQLCEFYIPGYYAKIIHGLLLDLTVFEYVL 354


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 143 ILLADCRLFIPPWLFKLYILVLCNL 69
           I +AD  + +PP+   +YI V+C+L
Sbjct: 439 ISIADA-MDVPPYAELIYIFVICSL 462


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -3

Query: 115 FPHGCLSYISWYCVICCNLSTLCFSL 38
           F +  LS I W CV  C  +   F L
Sbjct: 680 FDNQALSVIIWVCVFTCKFAESYFFL 705


>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 181 KFLAAYANSTNSSSFLQTVDYLFPHGC 101
           +FL    NS +S  F+Q  D   P+ C
Sbjct: 240 RFLLEGINSISSDEFIQLWDNRLPYPC 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,196,501
Number of Sequences: 5004
Number of extensions: 22917
Number of successful extensions: 62
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)