Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27a19
(279 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084197-25|AAK68591.1| 609|Caenorhabditis elegans Hypothetical... 29 0.37
U53139-11|AAK18936.2| 353|Caenorhabditis elegans Serpentine rec... 28 0.86
U40941-5|AAA81710.1| 300|Caenorhabditis elegans Hypothetical pr... 28 1.1
U80454-4|AAB37876.3| 896|Caenorhabditis elegans Prion-like-(q/n... 27 2.6
U56963-4|AAB38117.2| 316|Caenorhabditis elegans Serpentine rece... 27 2.6
U56963-3|AAP31428.1| 312|Caenorhabditis elegans Serpentine rece... 27 2.6
Z82075-6|CAN99721.1| 1047|Caenorhabditis elegans Hypothetical pr... 26 4.6
Z82075-5|CAD54162.1| 1021|Caenorhabditis elegans Hypothetical pr... 26 4.6
Z82075-4|CAB04932.1| 1023|Caenorhabditis elegans Hypothetical pr... 26 4.6
Z70756-11|CAA94793.2| 368|Caenorhabditis elegans Hypothetical p... 26 4.6
U56963-5|AAB38122.3| 323|Caenorhabditis elegans Serpentine rece... 26 4.6
U41542-8|AAN39682.1| 437|Caenorhabditis elegans Protein disulfi... 26 4.6
U41542-7|ABO16445.1| 371|Caenorhabditis elegans Protein disulfi... 26 4.6
U41542-6|AAK39152.1| 493|Caenorhabditis elegans Protein disulfi... 26 4.6
AL021489-6|CAN99715.1| 1047|Caenorhabditis elegans Hypothetical ... 26 4.6
AL021489-5|CAD54166.1| 1021|Caenorhabditis elegans Hypothetical ... 26 4.6
AL021489-4|CAA16371.1| 1023|Caenorhabditis elegans Hypothetical ... 26 4.6
Z92973-4|CAE18004.2| 328|Caenorhabditis elegans Hypothetical pr... 25 6.1
AF016442-8|AAB65916.1| 881|Caenorhabditis elegans Hypothetical ... 25 6.1
Z82282-6|CAB05273.1| 147|Caenorhabditis elegans Hypothetical pr... 25 8.0
Z68315-1|CAA92669.1| 486|Caenorhabditis elegans Hypothetical pr... 25 8.0
U37430-2|AAL08045.2| 802|Caenorhabditis elegans Hypothetical pr... 25 8.0
AC084197-5|AAO38574.1| 335|Caenorhabditis elegans Serpentine re... 25 8.0
>AC084197-25|AAK68591.1| 609|Caenorhabditis elegans Hypothetical
protein Y73B6BL.19 protein.
Length = 609
Score = 29.5 bits (63), Expect = 0.37
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 227 NNFEICISNMWKYRF--KIPSCIC*FHQQFILLADCRLFI 114
NN +IC+S +WKY+ K+ + F QF D LFI
Sbjct: 569 NNDKICVSQLWKYKIEVKLTFYVQFFFFQFSRSVDKVLFI 608
>U53139-11|AAK18936.2| 353|Caenorhabditis elegans Serpentine
receptor, class w protein71 protein.
Length = 353
Score = 28.3 bits (60), Expect = 0.86
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -3
Query: 151 NSSSFLQTVDYLFPHGCLSYISWYCVICCNLSTLCFSLKS 32
++SS+L +Y+ +G + +YC++ + S +CF+L S
Sbjct: 288 SASSYL---NYVIGYGSVFISFFYCIVATSHSVICFALSS 324
>U40941-5|AAA81710.1| 300|Caenorhabditis elegans Hypothetical
protein F35C8.5 protein.
Length = 300
Score = 27.9 bits (59), Expect = 1.1
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = -3
Query: 142 SFLQTVDYLFPHGCLSYISWYCV 74
+F+ T+ ++FP CL+Y W+ +
Sbjct: 190 TFITTIPWIFPTHCLTYWIWFFI 212
>U80454-4|AAB37876.3| 896|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 66
protein.
Length = 896
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 143 ILLADCRLFIPPWLFKLYILVLCNLL*FEYTLLFIEKW 30
I + +L++PP L +YIL+ C+ + I+KW
Sbjct: 501 IFRIESKLYLPPPLSLIYILLRCSTCMVLLIMWGIQKW 538
>U56963-4|AAB38117.2| 316|Caenorhabditis elegans Serpentine
receptor, class v protein29 protein.
Length = 316
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -3
Query: 175 LAAYANSTNSSSFLQTVDYLFP--HGCLSYISWYCVICCN 62
L Y + T ++ + T+ L+P +G LSYI+ +C++ N
Sbjct: 239 LQNYFSQTQNAGPVYTMRALYPIANGTLSYINPFCILLLN 278
>U56963-3|AAP31428.1| 312|Caenorhabditis elegans Serpentine
receptor, class v protein28 protein.
Length = 312
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -3
Query: 166 YANSTNSSSFLQTVDYLFP--HGCLSYISWYCVICCN 62
Y + T ++ + T+ L+P +G LSYI+ +C++ N
Sbjct: 242 YFSQTQNTGPIYTMRALYPIANGTLSYINPFCILLLN 278
>Z82075-6|CAN99721.1| 1047|Caenorhabditis elegans Hypothetical
protein W07A8.2c protein.
Length = 1047
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +3
Query: 129 VCKKDELLVELAYAARNFKPVFPH 200
V D LVE AYA RN FPH
Sbjct: 668 VLDPDTQLVEEAYAERNETRAFPH 691
>Z82075-5|CAD54162.1| 1021|Caenorhabditis elegans Hypothetical
protein W07A8.2b protein.
Length = 1021
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +3
Query: 129 VCKKDELLVELAYAARNFKPVFPH 200
V D LVE AYA RN FPH
Sbjct: 642 VLDPDTQLVEEAYAERNETRAFPH 665
>Z82075-4|CAB04932.1| 1023|Caenorhabditis elegans Hypothetical
protein W07A8.2a protein.
Length = 1023
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +3
Query: 129 VCKKDELLVELAYAARNFKPVFPH 200
V D LVE AYA RN FPH
Sbjct: 644 VLDPDTQLVEEAYAERNETRAFPH 667
>Z70756-11|CAA94793.2| 368|Caenorhabditis elegans Hypothetical
protein T06E4.7 protein.
Length = 368
Score = 25.8 bits (54), Expect = 4.6
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 100 LSYISWYCVIC 68
LS+ SWYC IC
Sbjct: 2 LSFFSWYCYIC 12
>U56963-5|AAB38122.3| 323|Caenorhabditis elegans Serpentine
receptor, class v protein30 protein.
Length = 323
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 163 ANSTNSSSFLQTVDYLFPHGCLSYISWYCVICCN 62
A +T +++T Y +G LSYI+ YC++ N
Sbjct: 245 AQNTEPVFYIRTF-YPIANGILSYINPYCILILN 277
>U41542-8|AAN39682.1| 437|Caenorhabditis elegans Protein disulfide
isomerase protein2, isoform b protein.
Length = 437
Score = 25.8 bits (54), Expect = 4.6
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Frame = +3
Query: 135 KKDEL----LVELAYAARNFKPVFPHITDANFKIIVYNY 239
KKDEL L+ L FKP F IT N NY
Sbjct: 248 KKDELPAIRLISLEEDMTKFKPDFEEITTENISKFTQNY 286
>U41542-7|ABO16445.1| 371|Caenorhabditis elegans Protein disulfide
isomerase protein2, isoform c protein.
Length = 371
Score = 25.8 bits (54), Expect = 4.6
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Frame = +3
Query: 135 KKDEL----LVELAYAARNFKPVFPHITDANFKIIVYNY 239
KKDEL L+ L FKP F IT N NY
Sbjct: 182 KKDELPAIRLISLEEDMTKFKPDFEEITTENISKFTQNY 220
>U41542-6|AAK39152.1| 493|Caenorhabditis elegans Protein disulfide
isomerase protein2, isoform a protein.
Length = 493
Score = 25.8 bits (54), Expect = 4.6
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Frame = +3
Query: 135 KKDEL----LVELAYAARNFKPVFPHITDANFKIIVYNY 239
KKDEL L+ L FKP F IT N NY
Sbjct: 304 KKDELPAIRLISLEEDMTKFKPDFEEITTENISKFTQNY 342
>AL021489-6|CAN99715.1| 1047|Caenorhabditis elegans Hypothetical
protein W07A8.2c protein.
Length = 1047
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +3
Query: 129 VCKKDELLVELAYAARNFKPVFPH 200
V D LVE AYA RN FPH
Sbjct: 668 VLDPDTQLVEEAYAERNETRAFPH 691
>AL021489-5|CAD54166.1| 1021|Caenorhabditis elegans Hypothetical
protein W07A8.2b protein.
Length = 1021
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +3
Query: 129 VCKKDELLVELAYAARNFKPVFPH 200
V D LVE AYA RN FPH
Sbjct: 642 VLDPDTQLVEEAYAERNETRAFPH 665
>AL021489-4|CAA16371.1| 1023|Caenorhabditis elegans Hypothetical
protein W07A8.2a protein.
Length = 1023
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +3
Query: 129 VCKKDELLVELAYAARNFKPVFPH 200
V D LVE AYA RN FPH
Sbjct: 644 VLDPDTQLVEEAYAERNETRAFPH 667
>Z92973-4|CAE18004.2| 328|Caenorhabditis elegans Hypothetical
protein Y6G8.4 protein.
Length = 328
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 145 NCWWN*HMQLGILNLYFHILLMQISKLLYITI 240
N W H+ I L ++L+ Q+S L+YI I
Sbjct: 186 NIWETGHVVYLITFLIMNVLISQLSPLIYIPI 217
>AF016442-8|AAB65916.1| 881|Caenorhabditis elegans Hypothetical
protein K12B6.1 protein.
Length = 881
Score = 25.4 bits (53), Expect = 6.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 67 NKLHSTRIYNLNNHGGI 117
+K+H+TR+Y N GG+
Sbjct: 739 SKVHNTRVYKSENGGGV 755
>Z82282-6|CAB05273.1| 147|Caenorhabditis elegans Hypothetical
protein T07G12.8 protein.
Length = 147
Score = 25.0 bits (52), Expect = 8.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 278 FFFIKIVLL*FYSIVIYNNFEICISN 201
F+F +L FY I I+ N+++ + N
Sbjct: 51 FYFFSNFILFFYKIKIFMNYQLLLRN 76
>Z68315-1|CAA92669.1| 486|Caenorhabditis elegans Hypothetical
protein F28C6.1 protein.
Length = 486
Score = 25.0 bits (52), Expect = 8.0
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 7 STLDLLFHHFSMKSRVYSNYNKLHSTRIY 93
++LDL +H+FS+ + + + N L R Y
Sbjct: 390 NSLDLSYHNFSLTTHGFGHPNSLSHYRSY 418
>U37430-2|AAL08045.2| 802|Caenorhabditis elegans Hypothetical
protein K09F5.6 protein.
Length = 802
Score = 25.0 bits (52), Expect = 8.0
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -3
Query: 115 FPHGCL-SYISWY--CVICCNLSTLCFSLKSGEIAG 17
+P+G L +Y + Y C+I L C KSG IAG
Sbjct: 49 YPYGYLMAYATIYLCCIIATFLFFTCGVFKSGNIAG 84
>AC084197-5|AAO38574.1| 335|Caenorhabditis elegans Serpentine
receptor, class v protein26 protein.
Length = 335
Score = 25.0 bits (52), Expect = 8.0
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = -3
Query: 235 LYTIILKFASVICGNTGLKFLAAYANSTNSSSFLQTVDYLFPHGCLSYISWYCVICCN 62
++ ++ F +++ L + + A T +L+T+ Y G LSY++ YC++ N
Sbjct: 226 VFVLLFAFFAILIFYAILNYCSR-AQMTAEMFYLRTI-YPMLSGFLSYMNPYCILLLN 281
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,519,538
Number of Sequences: 27780
Number of extensions: 126408
Number of successful extensions: 382
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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