Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27a07
(466 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 32 0.050
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 30 0.20
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 29 0.26
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 29 0.26
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|... 28 0.61
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 27 1.9
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 3.3
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 25 4.3
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 5.7
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 25 5.7
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 25 7.5
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 7.5
SPAC6F12.04 |||COPI-coated vesicle associated protein |Schizosac... 25 7.5
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 25 7.5
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo... 24 9.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 24 9.9
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 24 9.9
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 24 9.9
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 24 9.9
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 31.9 bits (69), Expect = 0.050
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +2
Query: 203 YNRPQRPKDYNPNG-NGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 331
Y R + DYN N N Y PI N Y+++ G PYF PG
Sbjct: 111 YRRKPKRDDYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157
Score = 25.8 bits (54), Expect = 3.3
Identities = 15/60 (25%), Positives = 24/60 (40%)
Frame = +2
Query: 161 YVPISTGPAYVNRPYNRPQRPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPGARG 340
Y P+ P Y++ P + P R + GY+ G Y + T FP ++G
Sbjct: 165 YKPLEADPQYLSVPSSMPSRRE--AGMAYGYQNYKRGGYTPNTQYFEEPLNNTSFPNSQG 222
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 29.9 bits (64), Expect = 0.20
Identities = 14/61 (22%), Positives = 24/61 (39%)
Frame = +1
Query: 178 WTCVRKPALQQTPKAKRLQP*WKRLRTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNI 357
W + A TP + + R + ++C R P RP + PW + + K I
Sbjct: 1255 WAIMYHVAAMHTPSIPQNEKISSLARDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTI 1314
Query: 358 L 360
+
Sbjct: 1315 I 1315
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 29.5 bits (63), Expect = 0.26
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 175 YWTCVRKPALQQTPKAKRLQP*WKRLR 255
YW C ++ +Q A +L P W R R
Sbjct: 454 YWMCCKEEGVQSDGSAPKLHPLWSRFR 480
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 29.5 bits (63), Expect = 0.26
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 367 NFLRYSLLPTASTRERGRLEVRSALGRVHVICTVVDRFV 251
NF ++P STR+R + +R G +H+IC D +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794
>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 278
Score = 28.3 bits (60), Expect = 0.61
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2
Query: 212 PQRPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT 319
P PK PN N +P NG + PP Y KPT
Sbjct: 43 PSFPKASKPNSN--QPYPNGPVCIYPPNIYLYAKPT 76
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 26.6 bits (56), Expect = 1.9
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +2
Query: 191 VNRPYNRPQRPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 316
VN+ + P+R +P+ + ID+ + + PP P+ P
Sbjct: 66 VNKNSSSPERELPTSPSHHANTEIDSSSSMLPPPSSDPFSSP 107
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.8 bits (54), Expect = 3.3
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
Frame = +2
Query: 116 NPDPGFSRPVIG--QPGYVPISTGPAYV-NRPYNRPQRPKDYNPNGNGYEPIDNGAYYVD 286
+P G + P PGY ST PAY+ + P P P Y+P Y P
Sbjct: 1548 SPGYGLTSPSYSPSSPGY---STSPAYMPSSPSYSPTSPS-YSPTSPSYSPTSPSYSPTS 1603
Query: 287 PPQG--RPYFKPT 319
P P + PT
Sbjct: 1604 PSYSATSPSYSPT 1616
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.4 bits (53), Expect = 4.3
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 145 NRSTRIRANKYWTCVRKPALQQTPKAKRLQP*WKRLRTYRQR 270
N T+I++ +YW C+R PK + +RTY+ +
Sbjct: 405 NHVTKIQS-QYWRCMRPKHFDANPKDAHVDRLHDVIRTYQAK 445
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.0 bits (52), Expect = 5.7
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Frame = +2
Query: 119 PDPGFSRPVIGQPGYVPISTGPAYVNRPYNR----PQRPKDYNPNGNGYEPIDNGAYYVD 286
P+PG + P Y+ P +N P R P P +P+ N +N Y +
Sbjct: 115 PNPGNGNVGLNNPSYMNSQASPNIMNAPLQRDTSVPPAPSMVHPHTNTNANSNNLKVYAN 174
Query: 287 PPQGRPYFKPT 319
+ PT
Sbjct: 175 QLSQQNTSNPT 185
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 25.0 bits (52), Expect = 5.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 224 KDYNPNGNGYEPIDNGAYYVDPPQGRP 304
K Y +G G +P + G YY + P+G+P
Sbjct: 479 KIYCVHGVG-KPTERGYYYTNNPEGQP 504
>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 677
Score = 24.6 bits (51), Expect = 7.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 127 RIRVRDENLSVGHSQQSEDENHEEFH 50
R+R RD N S S++S + + FH
Sbjct: 597 RLRTRDSNPSNTDSRESNHKKYNHFH 622
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 24.6 bits (51), Expect = 7.5
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 203 YNRPQRPKDYNPNGNG 250
YNR +P D+N NG
Sbjct: 189 YNRSSKPSDWNQQNNG 204
>SPAC6F12.04 |||COPI-coated vesicle associated protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 24.6 bits (51), Expect = 7.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 166 HVSGLTDYGPRKARIRVRDENL 101
+V+GL DY PR R D+N+
Sbjct: 108 YVAGLQDYAPRSMRDNDWDDNV 129
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 24.6 bits (51), Expect = 7.5
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -2
Query: 465 FFXKHYNMFIYLFR*HKFI*NFEI 394
FF K Y+ F+++FR + FI +FE+
Sbjct: 188 FFLKQYHNFMFVFRDY-FIRDFEL 210
>SPCC16A11.01 ||SPCC63.15|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 328
Score = 24.2 bits (50), Expect = 9.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 173 STGPAYVNRPYNRPQRPKDYN 235
+T P N P RP+RP YN
Sbjct: 293 ATEPGVSNIPETRPERPVVYN 313
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 24.2 bits (50), Expect = 9.9
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +2
Query: 128 GFSRPV--IGQP-GYVPISTGPAYVNRPYNRPQRPKDYNPNGNG 250
G+++P + P Y P+S Y+ YN+ +P +Y + G
Sbjct: 1352 GYAQPAGNMANPMSYDPVSNASLYMPSDYNQQTQPANYYDSSFG 1395
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 24.2 bits (50), Expect = 9.9
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 146 IGQPGYVPISTGPAYVNRPYN 208
+GQ VPI PAY N N
Sbjct: 133 VGQQSSVPIHINPAYTNSHQN 153
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 24.2 bits (50), Expect = 9.9
Identities = 15/50 (30%), Positives = 19/50 (38%)
Frame = +2
Query: 110 ISNPDPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPKDYNPNGNGYEP 259
++ DP P Q G + PA V P N P+ Y G Y P
Sbjct: 263 LTKEDPSAPVPKQFQSGGSVATAPPAAVVEPINEMYLPQKYGMFGGMYVP 312
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 24.2 bits (50), Expect = 9.9
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -1
Query: 199 PVYVRRSSTYWHVSGLTDYGPRKARIRVRDENLSVGHSQQSEDENHEEFHFY 44
P V SS + + G + KA VR N++ GH + S + + FY
Sbjct: 386 PREVSPSSGGYRMFGHSKPSSYKASGPVRPPNMATGHMRTSSEPTSYDSEFY 437
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,978
Number of Sequences: 5004
Number of extensions: 46474
Number of successful extensions: 140
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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