Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27a07
(466 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82284-1|CAB05287.1| 226|Caenorhabditis elegans Hypothetical pr... 33 0.10
U88183-3|AAB52656.2| 593|Caenorhabditis elegans Warthog (hedgeh... 31 0.41
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 29 1.2
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 29 1.2
Z82068-3|CAB04900.2| 1071|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z68748-6|CAD27621.1| 88|Caenorhabditis elegans Hypothetical pr... 28 2.9
U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer ... 28 3.8
U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer ... 28 3.8
U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer ... 28 3.8
AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein. 28 3.8
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z70753-10|CAD44125.1| 296|Caenorhabditis elegans Hypothetical p... 27 5.0
Z70753-1|CAD44126.1| 296|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z29443-8|CAE45742.1| 455|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z29443-7|CAA82571.2| 497|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr... 27 6.6
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 27 6.6
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 27 6.6
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 27 6.6
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 27 6.6
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 27 6.6
Z75711-1|CAB00032.1| 196|Caenorhabditis elegans Hypothetical pr... 27 8.8
Y14065-2|CAA74393.1| 497|Caenorhabditis elegans catalase 1 prot... 27 8.8
X82175-1|CAA57665.1| 500|Caenorhabditis elegans catalase protein. 27 8.8
AL034488-15|CAA22451.1| 500|Caenorhabditis elegans Hypothetical... 27 8.8
>Z82284-1|CAB05287.1| 226|Caenorhabditis elegans Hypothetical
protein T27E7.1 protein.
Length = 226
Score = 33.1 bits (72), Expect = 0.10
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +2
Query: 116 NPDPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPKDYNPNGNGYEPIDNGAYY-VDPP 292
NP PG S P P P++ GP + Q+P YN NG G +G++ PP
Sbjct: 35 NPQPGASFP----PNMNPVTNGPG------SWTQKPGGYN-NGPG-----SGSFKSTKPP 78
Query: 293 QGRPYFKPT--PFPGARGGK 346
+G Y++P P+ +GGK
Sbjct: 79 RGLVYYQPKNYPYKPGKGGK 98
>U88183-3|AAB52656.2| 593|Caenorhabditis elegans Warthog
(hedgehog-like family)protein 6 protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.41
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Frame = +2
Query: 119 PDPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPK--DYNPNGNGYEPIDNGAYYVDPP 292
P P S + P+ PAY P P P+ Y+ + +GY D Y P
Sbjct: 285 PPPPSSNYIDNVAPASPVVQSPAYPQTPAEMPLPPQSGSYSGSYSGYPTADASQYNAYPA 344
Query: 293 QGRPYFKPTPFP 328
+P ++P P
Sbjct: 345 MQQPAYQPAYQP 356
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 29.5 bits (63), Expect = 1.2
Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +2
Query: 119 PDPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPKDYNPNGNGYEPIDNGAYYVDPPQ- 295
P PG +P GY P P Y +PY P P+ G GY P PPQ
Sbjct: 694 PPPG--QPYGPPGGYPPQQQRPPYQAQPYPGPPPPQ--QQRGYGYPP---------PPQP 740
Query: 296 GRPYFKP 316
G PY +P
Sbjct: 741 GHPYQQP 747
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 29.5 bits (63), Expect = 1.2
Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +2
Query: 119 PDPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPKDYNPNGNGYEPIDNGAYYVDPPQ- 295
P PG +P GY P P Y +PY P P+ G GY P PPQ
Sbjct: 694 PPPG--QPYGPPGGYPPQQQRPPYQAQPYPGPPPPQ--QQRGYGYPP---------PPQP 740
Query: 296 GRPYFKP 316
G PY +P
Sbjct: 741 GHPYQQP 747
>Z82068-3|CAB04900.2| 1071|Caenorhabditis elegans Hypothetical
protein W04A4.5 protein.
Length = 1071
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 166 HVSGLTDYGPRKAR-IRVRDENLSVGHSQQSEDENHEEFHFYMITSYHR 23
H L + P R IRV DE +G +S+++ +E+ ++ +Y+R
Sbjct: 688 HYRFLRNASPNLVRPIRVLDEEKQIGRCSKSDEKTNEKAEEVVMNTYYR 736
>Z68748-6|CAD27621.1| 88|Caenorhabditis elegans Hypothetical
protein F13H10.6 protein.
Length = 88
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Frame = +2
Query: 161 YVPISTGPAYVNRPYNRPQRPKDYNPNGNGYEPI-DNGAYYVDPP 292
Y P + P Y +P P Y P GY P G YY P
Sbjct: 3 YQPYNQPPPYTQQPGYPPPGSAGYVPQQGGYYPQGQQGPYYPQQP 47
>U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform c protein.
Length = 796
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 197 RPYNRPQRPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT 319
+P+ PQ +++ ++P G DPP RP +P+
Sbjct: 419 QPHQPPQLSQNHTSQQGSHQPGHQGQVPNDPPISRPVLQPS 459
>U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform a protein.
Length = 892
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 197 RPYNRPQRPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT 319
+P+ PQ +++ ++P G DPP RP +P+
Sbjct: 515 QPHQPPQLSQNHTSQQGSHQPGHQGQVPNDPPISRPVLQPS 555
>U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform b protein.
Length = 864
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 197 RPYNRPQRPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT 319
+P+ PQ +++ ++P G DPP RP +P+
Sbjct: 487 QPHQPPQLSQNHTSQQGSHQPGHQGQVPNDPPISRPVLQPS 527
>AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein.
Length = 796
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 197 RPYNRPQRPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT 319
+P+ PQ +++ ++P G DPP RP +P+
Sbjct: 419 QPHQPPQLSQNHTSQQGSHQPGHQGQVPNDPPISRPVLQPS 459
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 27.5 bits (58), Expect = 5.0
Identities = 21/59 (35%), Positives = 25/59 (42%)
Frame = +2
Query: 155 PGYVPISTGPAYVNRPYNRPQRPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPG 331
PG P+ +GP + Y P P P G GAY PP+G P P P PG
Sbjct: 124 PGMPPMPSGPPPPSMAYGMPPMPSGMMP-PRGMP----GAY--PPPRGYP---PAPAPG 172
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 27.5 bits (58), Expect = 5.0
Identities = 21/59 (35%), Positives = 25/59 (42%)
Frame = +2
Query: 155 PGYVPISTGPAYVNRPYNRPQRPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPG 331
PG P+ +GP + Y P P P G GAY PP+G P P P PG
Sbjct: 124 PGMPPMPSGPPPPSMAYGMPPMPSGMMP-PRGMP----GAY--PPPRGYP---PAPAPG 172
>Z70753-10|CAD44125.1| 296|Caenorhabditis elegans Hypothetical
protein F40F9.1a protein.
Length = 296
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 182 PAYVNRPYNRPQRPKDYNPNGNGYEPIDNGAYYVDPP 292
PAY N N+ P +N G+G GAY+ PP
Sbjct: 10 PAYQNPYPNQGPPPPGFN-TGDGQNQNQGGAYFSPPP 45
>Z70753-1|CAD44126.1| 296|Caenorhabditis elegans Hypothetical
protein F40F9.1b protein.
Length = 296
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 182 PAYVNRPYNRPQRPKDYNPNGNGYEPIDNGAYYVDPP 292
PAY N N+ P +N G+G GAY+ PP
Sbjct: 10 PAYQNPYPNQGPPPPGFN-TGDGQNQNQGGAYFSPPP 45
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 27.5 bits (58), Expect = 5.0
Identities = 20/64 (31%), Positives = 25/64 (39%)
Frame = +2
Query: 149 GQPGYVPISTGPAYVNRPYNRPQRPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 328
G PG P G + P +P P P G+ P D GA G+ + T P
Sbjct: 151 GAPG-APGPDGQPGQDGPAGQPGAPGPAGPEGDAGAPGDAGAPGAPGAPGQDGQRGTGLP 209
Query: 329 GARG 340
GA G
Sbjct: 210 GAPG 213
>Z29443-8|CAE45742.1| 455|Caenorhabditis elegans Hypothetical
protein T07C4.9b protein.
Length = 455
Score = 27.5 bits (58), Expect = 5.0
Identities = 20/76 (26%), Positives = 27/76 (35%)
Frame = +2
Query: 116 NPDPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPKDYNPNGNGYEPIDNGAYYVDPPQ 295
N G+ GY P Y N Y+ +P+ G G +P G+
Sbjct: 2 NSGGGYPNQQPSYGGYGQPPQQPGYGNGSYDPYGQPQQQPYPGGGGQPPYPGSNSNQGGG 61
Query: 296 GRPYFKPTPFPGARGG 343
G P P+PG GG
Sbjct: 62 GYPGQGGAPYPGGSGG 77
>Z29443-7|CAA82571.2| 497|Caenorhabditis elegans Hypothetical
protein T07C4.9a protein.
Length = 497
Score = 27.5 bits (58), Expect = 5.0
Identities = 20/76 (26%), Positives = 27/76 (35%)
Frame = +2
Query: 116 NPDPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPKDYNPNGNGYEPIDNGAYYVDPPQ 295
N G+ GY P Y N Y+ +P+ G G +P G+
Sbjct: 44 NSGGGYPNQQPSYGGYGQPPQQPGYGNGSYDPYGQPQQQPYPGGGGQPPYPGSNSNQGGG 103
Query: 296 GRPYFKPTPFPGARGG 343
G P P+PG GG
Sbjct: 104 GYPGQGGAPYPGGSGG 119
>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical protein
C27B7.4 protein.
Length = 1274
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 245 NGYEPIDNGAYYVDPPQGRPYFKPTPFPGA 334
NGY +NG +P Q P P+ FPGA
Sbjct: 1146 NGYPNNNNGGAIGNPQQMLPPRDPSAFPGA 1175
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 27.1 bits (57), Expect = 6.6
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +2
Query: 119 PDPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPKDYNPNGNGYEPIDNGAYYVDP-PQ 295
P P GQ G VP GP + P P P + P G + I NGA P P
Sbjct: 173 PGPQGDAGTSGQDG-VPGLPGPPGPSGPQGAPGVPGEKGPTGEPGKVI-NGAPPGPPGPP 230
Query: 296 GRPYFKPTPFPGARGGK 346
G P + P P + G+
Sbjct: 231 GPPGPQGPPGPPGKDGQ 247
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 195 TGPTTDPKGQKITTLMETATNLSTTVHITWTLPKADLTSSLPL 323
T PTT P +TT T T STT T T T + P+
Sbjct: 670 TSPTTAPTVPPVTTTTPTTTT-STTTTTTTTTTTTQTTPTTPV 711
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 195 TGPTTDPKGQKITTLMETATNLSTTVHITWTLPKADLTSSLPL 323
T PTT P +TT T T STT T T T + P+
Sbjct: 726 TSPTTAPTVPPVTTTTPTTTT-STTTTTTTTTTTTQTTPTTPV 767
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 195 TGPTTDPKGQKITTLMETATNLSTTVHITWTLPKADLTSSLPL 323
T PTT P +TT T T STT T T T + P+
Sbjct: 549 TSPTTAPTVPPVTTTTPTTTT-STTTTTTTTTTTTQTTPTTPV 590
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 27.1 bits (57), Expect = 6.6
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +2
Query: 71 VLALLAMANAQVLISNPDPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPKDYNPNGNG 250
VL L+ +A+A PDP P G P GP+ + P P P +P+G
Sbjct: 39 VLVLVLVAHAVDPSDLPDPSSPPPAPRPSGQPPGPQGPSDLPGPSGAPPGPP--HPSGPP 96
Query: 251 YEP 259
+ P
Sbjct: 97 HRP 99
>Z75711-1|CAB00032.1| 196|Caenorhabditis elegans Hypothetical
protein K02B12.2 protein.
Length = 196
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 231 TTLMETATNLSTTVHITWTLPKAD 302
TT +++ T+LS + TW LPK D
Sbjct: 24 TTHVKSTTDLSKCGNCTWVLPKLD 47
>Y14065-2|CAA74393.1| 497|Caenorhabditis elegans catalase 1
protein.
Length = 497
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 179 GPAYVNRPYNRPQRPKDYNPNGNGYEPIDN 268
GP Y+ P N P R + +N +G DN
Sbjct: 360 GPNYIQLPVNCPYRSRAHNTQRDGAMAYDN 389
>X82175-1|CAA57665.1| 500|Caenorhabditis elegans catalase protein.
Length = 500
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 179 GPAYVNRPYNRPQRPKDYNPNGNGYEPIDN 268
GP Y+ P N P R + +N +G DN
Sbjct: 363 GPNYIQLPVNCPYRSRAHNTQRDGAMAYDN 392
>AL034488-15|CAA22451.1| 500|Caenorhabditis elegans Hypothetical
protein Y54G11A.5 protein.
Length = 500
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 179 GPAYVNRPYNRPQRPKDYNPNGNGYEPIDN 268
GP Y+ P N P R + +N +G DN
Sbjct: 363 GPNYIQLPVNCPYRSRAHNTQRDGAMAYDN 392
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,171,404
Number of Sequences: 27780
Number of extensions: 271323
Number of successful extensions: 861
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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