Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27a06
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,190...    29   3.4  
01_05_0461 + 22446797-22447050,22447171-22447288,22447895-224482...    29   3.4  
07_03_0030 - 12623238-12623396,12623494-12623687,12624228-126243...    29   4.5  
06_02_0041 + 10889741-10890092,10890161-10890235,10891139-108923...    29   4.5  
02_01_0726 + 5440341-5440661,5441574-5441620,5442917-5442977,544...    29   4.5  
04_03_0089 - 11027773-11028315                                         28   7.9  

>05_01_0251 +
           1901709-1901864,1901968-1901999,1902534-1902664,
           1902740-1902821,1902928-1903054,1903369-1903686,
           1903785-1903846,1903988-1904074,1904139-1904195,
           1906113-1906197,1906916-1907185,1908158-1908254,
           1908390-1908436,1908826-1908939,1909024-1909117,
           1909360-1909457,1910356-1910455,1911445-1911521,
           1911824-1913122
          Length = 1110

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = +3

Query: 249 GLVCLSLHLYYVFCLEEESGGVFGLGGPKRIIMHLGPALPGKRPGPAVVSPFHYVKLSFK 428
           G++  +LHL  +   EEE   V    GP+  ++ L   +  +R   ++      V+  F 
Sbjct: 627 GVMDKTLHLLQMGFTEEEVSSVIDKAGPEATVLELADTIFARRIASSIEQKEVKVEPDFL 686

Query: 429 DGVDTAF 449
           D  +T++
Sbjct: 687 DETETSY 693


>01_05_0461 +
           22446797-22447050,22447171-22447288,22447895-22448217,
           22448908-22449056,22449324-22449463,22449606-22449757,
           22449862-22450021,22450071-22450088
          Length = 437

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 297 LLNKTHNTDGEINKLSLLVYLLVFPIEVYVLLIELHHQ 184
           L  K HN  G +++L L V LL+       L + L+HQ
Sbjct: 291 LKGKGHNEKGRLSRLKLSVILLILTNVPMALYMSLYHQ 328


>07_03_0030 -
           12623238-12623396,12623494-12623687,12624228-12624332,
           12625328-12625392,12626151-12626350,12626466-12626604,
           12626677-12626804,12630145-12630369,12630461-12630670
          Length = 474

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 397 LTTAGP-GLFPGSAGPKCIIILFGPPRPNTPPLSSSKQ 287
           + T GP   + G  GP   ++L  P R N PPL S ++
Sbjct: 344 IETHGPWNTYSGMMGPVTNVLLVTPKRVNLPPLQSLRK 381


>06_02_0041 +
           10889741-10890092,10890161-10890235,10891139-10892341,
           10892970-10893253,10893343-10893459,10894126-10894388,
           10894557-10894725,10894838-10895110,10895674-10895718,
           10896472-10896591,10896926-10896987,10897296-10897318,
           10897911-10898128
          Length = 1067

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 399 GSLLLDQAFSLAVQDLNALLF 337
           G +L+DQ +++A  DLN LLF
Sbjct: 272 GGVLIDQVYAVAPSDLNGLLF 292


>02_01_0726 +
           5440341-5440661,5441574-5441620,5442917-5442977,
           5442978-5443035,5443303-5443463,5443692-5443808,
           5443888-5443989,5444834-5444908,5444996-5445084,
           5445171-5445220,5445562-5445641,5445744-5445953,
           5446103-5446170,5446363-5446423,5446719-5447081
          Length = 620

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 3   ALVYKCCLLFHQCIKFNFSNQ*FNVMDR 86
           A    CC+L HQ +KFN     F+ + R
Sbjct: 132 AFFTNCCILVHQVLKFNGQEALFSALQR 159


>04_03_0089 - 11027773-11028315
          Length = 180

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
 Frame = +2

Query: 287 LFRRRKWWRIWSWGSKKN-NNAFRSCTAREKAWSSSSEPISLCETIIQRWSR 439
           L RR  WW +W  G  KN  N F     R   W       ++ E  I RW R
Sbjct: 82  LQRRWLWWLLWGGGEGKNGKNGFAG--GRGSQWCKDLARGTI-EEEIDRWRR 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,244,298
Number of Sequences: 37544
Number of extensions: 381885
Number of successful extensions: 1108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)