Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27a06
(680 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC050439-1|AAH50439.1| 386|Homo sapiens vacuolar protein sortin... 121 2e-27
BC037279-1|AAH37279.1| 386|Homo sapiens vacuolar protein sortin... 121 2e-27
AL359513-3|CAH71658.1| 386|Homo sapiens vacuolar protein sortin... 121 2e-27
AF151903-1|AAD34140.1| 386|Homo sapiens CGI-145 protein protein. 121 2e-27
AK023182-1|BAB14451.1| 261|Homo sapiens protein ( Homo sapiens ... 43 0.001
BC074819-1|AAH74819.2| 426|Homo sapiens SMAD family member 7 pr... 31 3.8
BC074818-1|AAH74818.2| 426|Homo sapiens SMAD family member 7 pr... 31 3.8
AF026559-1|AAL68977.1| 426|Homo sapiens Smad7 protein. 31 3.8
AF015261-1|AAB81354.1| 426|Homo sapiens Smad7 protein protein. 31 3.8
AF010193-1|AAB81246.1| 426|Homo sapiens MAD-related gene SMAD7 ... 31 3.8
BC117423-1|AAI17424.1| 309|Homo sapiens taste receptor, type 2,... 30 6.6
AY724943-1|AAU21145.1| 309|Homo sapiens taste receptor T2R43 pr... 30 6.6
AY114089-1|AAM63539.1| 309|Homo sapiens putative taste receptor... 30 6.6
AF494237-1|AAM19328.1| 309|Homo sapiens candidate taste recepto... 30 6.6
AB199182-1|BAD98056.1| 285|Homo sapiens bitter taste receptor T... 30 6.6
>BC050439-1|AAH50439.1| 386|Homo sapiens vacuolar protein sorting
36 homolog (S. cerevisiae) protein.
Length = 386
Score = 121 bits (292), Expect = 2e-27
Identities = 72/199 (36%), Positives = 110/199 (55%), Gaps = 1/199 (0%)
Frame = +3
Query: 78 MDRFEYIEARLFDGENYLKRDKNVKIYDGDDKTQFIDGEVLLTTHRLLWGKPGDIPKGLV 257
MDRF + L E + + + V+IYDG++K +F G +LL+THRL+W D
Sbjct: 1 MDRFVWTSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWR---DQKNHEC 57
Query: 258 CLSLHLYYVFCLEEESGGVFGLGGPKRIIMHLGPALPGKRPGPAVVSPFHYVKLSFKDGV 437
C+++ L + +EE++ G+ G +I++HL PA P K PGP S Y+KLSFK+
Sbjct: 58 CMAILLSQIVFIEEQAAGI---GKSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHG 114
Query: 438 DTAFYKALSDAVAAKAWERQTPIDXXXXXXXXXXXXXXXXXXXNSKIRS-GIVGIERSIE 614
FY+ LS+ + + WE P+ +IR+ GIVGIER +E
Sbjct: 115 QIEFYRRLSEEMTQRRWENM-PVSQSLQTNRGPQP---------GRIRAVGIVGIERKLE 164
Query: 615 EQHRATDQSISVAFQDLTK 671
E+ + TD++IS AF+DL+K
Sbjct: 165 EKRKETDKNISEAFEDLSK 183
>BC037279-1|AAH37279.1| 386|Homo sapiens vacuolar protein sorting
36 homolog (S. cerevisiae) protein.
Length = 386
Score = 121 bits (292), Expect = 2e-27
Identities = 72/199 (36%), Positives = 110/199 (55%), Gaps = 1/199 (0%)
Frame = +3
Query: 78 MDRFEYIEARLFDGENYLKRDKNVKIYDGDDKTQFIDGEVLLTTHRLLWGKPGDIPKGLV 257
MDRF + L E + + + V+IYDG++K +F G +LL+THRL+W D
Sbjct: 1 MDRFVWTSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWR---DQKNHEC 57
Query: 258 CLSLHLYYVFCLEEESGGVFGLGGPKRIIMHLGPALPGKRPGPAVVSPFHYVKLSFKDGV 437
C+++ L + +EE++ G+ G +I++HL PA P K PGP S Y+KLSFK+
Sbjct: 58 CMAILLSQIVFIEEQAAGI---GKSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHG 114
Query: 438 DTAFYKALSDAVAAKAWERQTPIDXXXXXXXXXXXXXXXXXXXNSKIRS-GIVGIERSIE 614
FY+ LS+ + + WE P+ +IR+ GIVGIER +E
Sbjct: 115 QIEFYRRLSEEMTQRRWENM-PVSQSLQTNRGPQP---------GRIRAVGIVGIERKLE 164
Query: 615 EQHRATDQSISVAFQDLTK 671
E+ + TD++IS AF+DL+K
Sbjct: 165 EKRKETDKNISEAFEDLSK 183
>AL359513-3|CAH71658.1| 386|Homo sapiens vacuolar protein sorting
36 (yeast) protein.
Length = 386
Score = 121 bits (292), Expect = 2e-27
Identities = 72/199 (36%), Positives = 110/199 (55%), Gaps = 1/199 (0%)
Frame = +3
Query: 78 MDRFEYIEARLFDGENYLKRDKNVKIYDGDDKTQFIDGEVLLTTHRLLWGKPGDIPKGLV 257
MDRF + L E + + + V+IYDG++K +F G +LL+THRL+W D
Sbjct: 1 MDRFVWTSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWR---DQKNHEC 57
Query: 258 CLSLHLYYVFCLEEESGGVFGLGGPKRIIMHLGPALPGKRPGPAVVSPFHYVKLSFKDGV 437
C+++ L + +EE++ G+ G +I++HL PA P K PGP S Y+KLSFK+
Sbjct: 58 CMAILLSQIVFIEEQAAGI---GKSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHG 114
Query: 438 DTAFYKALSDAVAAKAWERQTPIDXXXXXXXXXXXXXXXXXXXNSKIRS-GIVGIERSIE 614
FY+ LS+ + + WE P+ +IR+ GIVGIER +E
Sbjct: 115 QIEFYRRLSEEMTQRRWENM-PVSQSLQTNRGPQP---------GRIRAVGIVGIERKLE 164
Query: 615 EQHRATDQSISVAFQDLTK 671
E+ + TD++IS AF+DL+K
Sbjct: 165 EKRKETDKNISEAFEDLSK 183
>AF151903-1|AAD34140.1| 386|Homo sapiens CGI-145 protein protein.
Length = 386
Score = 121 bits (292), Expect = 2e-27
Identities = 72/199 (36%), Positives = 110/199 (55%), Gaps = 1/199 (0%)
Frame = +3
Query: 78 MDRFEYIEARLFDGENYLKRDKNVKIYDGDDKTQFIDGEVLLTTHRLLWGKPGDIPKGLV 257
MDRF + L E + + + V+IYDG++K +F G +LL+THRL+W D
Sbjct: 1 MDRFVWTSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWR---DQKNHEC 57
Query: 258 CLSLHLYYVFCLEEESGGVFGLGGPKRIIMHLGPALPGKRPGPAVVSPFHYVKLSFKDGV 437
C+++ L + +EE++ G+ G +I++HL PA P K PGP S Y+KLSFK+
Sbjct: 58 CMAILLSQIVFIEEQAAGI---GKSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHG 114
Query: 438 DTAFYKALSDAVAAKAWERQTPIDXXXXXXXXXXXXXXXXXXXNSKIRS-GIVGIERSIE 614
FY+ LS+ + + WE P+ +IR+ GIVGIER +E
Sbjct: 115 QIEFYRRLSEEMTQRRWENM-PVSQSLQTNRGPQP---------GRIRAVGIVGIERKLE 164
Query: 615 EQHRATDQSISVAFQDLTK 671
E+ + TD++IS AF+DL+K
Sbjct: 165 EKRKETDKNISEAFEDLSK 183
>AK023182-1|BAB14451.1| 261|Homo sapiens protein ( Homo sapiens
cDNA FLJ13120 fis, clone NT2RP3002682, highly similar to
Homo sapiens CGI-145 protein mRNA. ).
Length = 261
Score = 42.7 bits (96), Expect = 0.001
Identities = 20/34 (58%), Positives = 29/34 (85%), Gaps = 1/34 (2%)
Frame = +3
Query: 573 KIRS-GIVGIERSIEEQHRATDQSISVAFQDLTK 671
+IR+ GIVGIER +EE+ + TD++IS AF+DL+K
Sbjct: 25 RIRAVGIVGIERKLEEKRKETDKNISEAFEDLSK 58
>BC074819-1|AAH74819.2| 426|Homo sapiens SMAD family member 7
protein.
Length = 426
Score = 31.1 bits (67), Expect = 3.8
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 383 SSSSEPISLCETIIQRWSRYCFLQSFK*RCCCQSLGKTN 499
SS S P+ LC+ RW K CCC+S GK N
Sbjct: 151 SSYSLPLLLCKVF--RWPDLRHSSEVKRLCCCESYGKIN 187
>BC074818-1|AAH74818.2| 426|Homo sapiens SMAD family member 7
protein.
Length = 426
Score = 31.1 bits (67), Expect = 3.8
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 383 SSSSEPISLCETIIQRWSRYCFLQSFK*RCCCQSLGKTN 499
SS S P+ LC+ RW K CCC+S GK N
Sbjct: 151 SSYSLPLLLCKVF--RWPDLRHSSEVKRLCCCESYGKIN 187
>AF026559-1|AAL68977.1| 426|Homo sapiens Smad7 protein.
Length = 426
Score = 31.1 bits (67), Expect = 3.8
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 383 SSSSEPISLCETIIQRWSRYCFLQSFK*RCCCQSLGKTN 499
SS S P+ LC+ RW K CCC+S GK N
Sbjct: 151 SSYSLPLLLCKVF--RWPDLRHSSEVKRLCCCESYGKIN 187
>AF015261-1|AAB81354.1| 426|Homo sapiens Smad7 protein protein.
Length = 426
Score = 31.1 bits (67), Expect = 3.8
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 383 SSSSEPISLCETIIQRWSRYCFLQSFK*RCCCQSLGKTN 499
SS S P+ LC+ RW K CCC+S GK N
Sbjct: 151 SSYSLPLLLCKVF--RWPDLRHSSEVKRLCCCESYGKIN 187
>AF010193-1|AAB81246.1| 426|Homo sapiens MAD-related gene SMAD7
protein.
Length = 426
Score = 31.1 bits (67), Expect = 3.8
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 383 SSSSEPISLCETIIQRWSRYCFLQSFK*RCCCQSLGKTN 499
SS S P+ LC+ RW K CCC+S GK N
Sbjct: 151 SSYSLPLLLCKVF--RWPDLRHSSEVKRLCCCESYGKIN 187
>BC117423-1|AAI17424.1| 309|Homo sapiens taste receptor, type 2,
member 43 protein.
Length = 309
Score = 30.3 bits (65), Expect = 6.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 230 TRRYTKRLSLFISPSVLCVLFRRRKWWRIWSWGSKKNNNAFRSCTA 367
T+ + K L IS +LC ++ +WS+GS +N F C A
Sbjct: 221 TKVHIKALQTVISFLLLCAIYFLSIMISVWSFGSLENKPVFMFCKA 266
>AY724943-1|AAU21145.1| 309|Homo sapiens taste receptor T2R43
protein.
Length = 309
Score = 30.3 bits (65), Expect = 6.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 230 TRRYTKRLSLFISPSVLCVLFRRRKWWRIWSWGSKKNNNAFRSCTA 367
T+ + K L IS +LC ++ +WS+GS +N F C A
Sbjct: 221 TKVHIKALQTVISFLLLCAIYFLSIMISVWSFGSLENKPVFMFCKA 266
>AY114089-1|AAM63539.1| 309|Homo sapiens putative taste receptor
T2R52 protein.
Length = 309
Score = 30.3 bits (65), Expect = 6.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 230 TRRYTKRLSLFISPSVLCVLFRRRKWWRIWSWGSKKNNNAFRSCTA 367
T+ + K L IS +LC ++ +WS+GS +N F C A
Sbjct: 221 TKVHIKALQTVISFLLLCAIYFLSIMISVWSFGSLENKPVFMFCKA 266
>AF494237-1|AAM19328.1| 309|Homo sapiens candidate taste receptor
TAS2R43 protein.
Length = 309
Score = 30.3 bits (65), Expect = 6.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 230 TRRYTKRLSLFISPSVLCVLFRRRKWWRIWSWGSKKNNNAFRSCTA 367
T+ + K L IS +LC ++ +WS+GS +N F C A
Sbjct: 221 TKVHIKALQTVISFLLLCAIYFLSIMISVWSFGSLENKPVFMFCKA 266
>AB199182-1|BAD98056.1| 285|Homo sapiens bitter taste receptor
T2R43 protein.
Length = 285
Score = 30.3 bits (65), Expect = 6.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 230 TRRYTKRLSLFISPSVLCVLFRRRKWWRIWSWGSKKNNNAFRSCTA 367
T+ + K L IS +LC ++ +WS+GS +N F C A
Sbjct: 213 TKVHIKALQTVISFLLLCAIYFLSIMISVWSFGSLENKPVFMFCKA 258
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,273,158
Number of Sequences: 237096
Number of extensions: 2330272
Number of successful extensions: 6373
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6362
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -